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[183539_s_at]

Description C06E7.4 /REP_DB=WormBase Gene ID /WP=CE03960 /TR=Q17732 /GB=AAA82281.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 57      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1778
1 2 3 4 range
A 385.3
(-1.7)
A 		1399.7
(2.3)
P 		1566.4
(3)
P 		53.9
(-3)
A 		1513
B 467.1
(-1.8)
A 		1537.3
(2)
P 		1804.4
(3)
P 		121
(-3)
A 		1683
C 398.1
(-1.6)
P 		1416.5
(2.1)
P 		1665.2
(3)
P 		26.6
(-3)
A 		1639
avr 416.8
(-1.7) 		1451.2
(2.2) 		1678.7
(3) 		67.2
(-3) 		1612

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 855
1 2 3 4 5 6 range
A 377.2
(-3)
A 		1183
(3)
P 		502.8
(-2.1)
P 		688.3
(-0.7)
P 		606.5
(-1.3)
P 		417.7
(-2.7)
P 		806
B 414.2
(-2.3)
A 		1060.3
(3)
P 		413.1
(-2.3)
P 		570.6
(-1)
P 		543.6
(-1.2)
P 		327.8
(-3)
P 		733
C 483
(-1)
M 		766
(3)
P 		643.2
(1.3)
P 		591.5
(0.5)
P 		688.7
(1.9)
P 		342.7
(-3)
P 		423
avr 424.8
(-2.4) 		1003.1
(3) 		519.7
(-1.5) 		616.8
(-0.6) 		612.9
(-0.7) 		362.7
(-3) 		640
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 576
1 2 3 4 range
A 140.3
(-1)
A 		303.8
(1.4)
P 		409.5
(3)
P 		7.9
(-3)
A 		402
B 148.9
(-1.1)
A 		379.7
(2.4)
P 		418.1
(3)
P 		25.8
(-3)
A 		392
C 131.8
(-1.7)
P 		407.3
(1.2)
P 		580.4
(3)
P 		4.5
(-3)
A 		576
avr 140.3
(-1.3) 		363.6
(1.6) 		469.3
(3) 		12.7
(-3) 		457

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 69.5
(-3)
A 		420.7
(3)
P 		109.5
(-2.3)
P 		174.6
(-1.2)
P 		183
(-1.1)
P 		101.7
(-2.4)
P 		351
B 144.1
(-2)
A 		352.9
(3)
P 		100.3
(-3)
P 		151.1
(-1.8)
P 		220.9
(-0.1)
P 		122.3
(-2.5)
P 		253
C 179
(0.2)
M 		233.7
(3)
P 		163.7
(-0.5)
P 		118.9
(-2.8)
P 		222.8
(2.5)
P 		114.7
(-3)
P 		119
avr 130.9
(-2.5) 		335.8
(3) 		124.5
(-2.7) 		148.2
(-2) 		208.9
(-0.4) 		112.9
(-3) 		223
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183539_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10513
Sequence Type Exemplar sequence
Representative Public ID C06E7.4 NCBI
Target Description C06E7.4 /REP_DB=WormBase Gene ID /WP=CE03960 /TR=Q17732 /GB=AAA82281.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068473(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068473 NCBI Caenorhabditis elegans C06E7.4 (C06E7.4) mRNA, complete cds. 11/11 A 
SNAP00000039818 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5850914:5853193:-1 11/11 None
GENEFINDER00000039824 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5850914:5853193:-1 11/11 None
C06E7.4 ENSEMBL cdna:known chromosome:CEL140:IV:5850824:5859961:-1 gene:C06E7.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5850919-5853199(-) 96.92 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E7.4
Entrez Gene 177356 Entrez gene
SwissProt Q17732 EMBL-EBI
WormBase CE29026 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82282 Hypothetical protein C06E7.4 [Caenorhabditis elegans] ref|NP_500874.1| C06E7.4 [Caenorhabditis elegans] 0.0
blast CAE72640 Hypothetical protein CBG19842 [Caenorhabditis briggsae] 0.0
blast AAA82282 Hypothetical protein C06E7.4 [Caenorhabditis elegans] ref|NP_500874.1| C06E7.4 [Caenorhabditis elegans] 1.0E-167
blast CAE72640 Hypothetical protein CBG19842 [Caenorhabditis briggsae] 1.0E-139
Sequence
Target Sequence 
>C. ELEGANS:183539_S_AT
aaaaagagcaccaccaactgcagcccagacagcctcttcaacgtcatcacggattcaaca
taatcaaacattgaataattcaaatgcaacatatgctcaaccaataatccgtcgtcaacc
atcatatggctcgagatcttcgtcaattgccacgtcacaaatgagatgtgatcaatcgga
aattgatttttcatgggttaatgaggaagaggacaaactgaagagagaatcaaaacgaat
cgatagtcttcctgaattctacttcggaatggatcctccaccagttccaagtgataatga
gaaggagaacgatgagaagagaaacagacggaagagtagtgtgctggaaaagactgcggc
tttcgagattgaagcaagaagaaatgatcggaaggagccgtcattcctgtcacgatccag
tcatcaattactgacgacgtctgaaatcccaccggctgattattccccactctcaatcca
cacgaaagagattggcggtcctgctgaacgtcgaatttatcgaattcagaagcaacagca
gcagcattcatctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAAGAGCACCACCAACTGCAGCC 623 129 432 Antisense
CCTCTTCAACGTCATCACGGATTCA 428 267 464 Antisense
ATGCTCAACCAATAATCCGTCGTCA 367 39 524 Antisense
AATCCGTCGTCAACCATCATATGGC 523 165 537 Antisense
CGAGATCTTCGTCAATTGCCACGTC 5 251 563 Antisense
GATAGTCTTCCTGAATTCTACTTCG 546 425 673 Antisense
TCGGAAGGAGCCGTCATTCCTGTCA 516 605 819 Antisense
TACTGACGACGTCTGAAATCCCACC 682 641 860 Antisense
TGAAATCCCACCGGCTGATTATTCC 159 573 873 Antisense
AAAGAGATTGGCGGTCCTGCTGAAC 600 121 916 Antisense
GCAACAGCAGCAGCATTCATCTGAA 510 319 963 Antisense
Sequence Source Affymetrix Proprietary Database