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[183537_at]

Description C03G6.6 /REP_DB=WormBase Gene ID /WP=CE07880 /TR=O01453 /GB=AAB52306.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 18      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 4.1
(-3)
A 		50.9
(2.4)
M 		31.2
(0.1)
A 		56
(3)
P 		52
B 27
(-2)
A 		32
(-0)
A 		24.3
(-3)
A 		39.9
(3)
P 		16
C 23.3
(-1)
A 		5.7
(-3)
A 		8.8
(-2.6)
A 		58.7
(3)
M 		53
avr 18.1
(-3) 		29.5
(-1) 		21.4
(-2.4) 		51.5
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 596
1 2 3 4 5 6 range
A 2.4
(-3)
A 		43.6
(-2.6)
A 		146.9
(-1.5)
P 		593.5
(3)
P 		354.9
(0.6)
P 		48.4
(-2.5)
P 		591
B 23.9
(-3)
A 		44.4
(-2.7)
P 		175.2
(-0.7)
P 		422.5
(3)
P 		420
(3)
P 		73.9
(-2.2)
P 		399
C 8.5
(-3)
A 		93.8
(-2.1)
P 		131.5
(-1.7)
P 		598.2
(3)
P 		355.7
(0.5)
P 		77.2
(-2.3)
P 		590
avr 11.6
(-3) 		60.6
(-2.4) 		151.2
(-1.4) 		538.1
(3) 		376.9
(1.2) 		66.5
(-2.4) 		527
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.5
(-3)
A 		11
(3)
M 		8.2
(1.2)
A 		8.2
(1.2)
P 		10
B 8.6
(3)
A 		7.9
(1.6)
A 		5.6
(-3)
A 		8.5
(2.8)
P 		3
C 7.7
(1.4)
A 		1.6
(-3)
A 		3.1
(-1.9)
A 		9.9
(3)
M 		8
avr 5.9
(-2.5) 		6.8
(-0.8) 		5.6
(-3) 		8.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 0.4
(-3)
A 		15.5
(-2.4)
A 		32
(-1.7)
P 		150.5
(3)
P 		107.1
(1.3)
P 		11.8
(-2.5)
P 		150
B 8.3
(-3)
A 		14.8
(-2.8)
P 		42.6
(-1.7)
P 		111.9
(0.8)
P 		170.6
(3)
P 		27.6
(-2.3)
P 		162
C 3.1
(-3)
A 		28.6
(-1.7)
P 		33.5
(-1.4)
P 		120.3
(3)
P 		115.1
(2.7)
P 		25.8
(-1.8)
P 		117
avr 3.9
(-3) 		19.6
(-2.3) 		36
(-1.5) 		127.6
(2.8) 		130.9
(3) 		21.7
(-2.2) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183537_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11659
Sequence Type Exemplar sequence
Representative Public ID C03G6.6 NCBI
Target Description C03G6.6 /REP_DB=WormBase Gene ID /WP=CE07880 /TR=O01453 /GB=AAB52306.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072477 NCBI Caenorhabditis elegans C03G6.6 (C03G6.6) mRNA, complete cds. 11/11 None
SNAP00000031553 ENSEMBL cdna:SNAP chromosome:CEL140:V:7360284:7361475:1 11/11 None
GENEFINDER00000031572 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7360044:7361491:1 10/11 None
C03G6.6 ENSEMBL cdna:known chromosome:CEL140:V:7360044:7361475:1 gene:C03G6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7360044-7361476(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03G6.6
Entrez Gene 182169 Entrez gene
SwissProt O01453 EMBL-EBI
WormBase CE36265 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52306 Hypothetical protein C03G6.6 [Caenorhabditis elegans] ref|NP_504878.2| C03G6.6 [Caenorhabditis elegans] 1.0E-173
blast AAB52306 Hypothetical protein C03G6.6 [Caenorhabditis elegans] ref|NP_504878.2| C03G6.6 [Caenorhabditis elegans] 1.0E-139
blast CAE67397 Hypothetical protein CBG12883 [Caenorhabditis briggsae] 1.0E-123
blast AAC16984 Hypothetical protein C04F1.1 [Caenorhabditis elegans] ref|NP_491669.1| C04F1.1 [Caenorhabditis elegans] 1.0E-122
blast AAB52306 Hypothetical protein C03G6.6 [Caenorhabditis elegans] ref|NP_504878.2| C03G6.6 [Caenorhabditis elegans] 1.0E-111
blast CAE67397 Hypothetical protein CBG12883 [Caenorhabditis briggsae] 5.0E-95
blast AAC16984 Hypothetical protein C04F1.1 [Caenorhabditis elegans] ref|NP_491669.1| C04F1.1 [Caenorhabditis elegans] 1.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 1.3E-47
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 4.8E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504878.2 1 7-26
C03G6.6 1 7-26
GENEFINDER00000031572 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:183537_AT
tactggacctcataatttgttcacaattggagttggaagagacattcgagctgaaaagca
gttcaggagaaaaatgcacaaacttggaaacaatgtgacatttgtcggggcggacccagt
tccacataatggtgacttgtactctcaaatcggaaactatttccctttggcaattggagg
aaaaagtggaatttcaaatgcacgggttcttgaaaacagcggatacattgacacggataa
aattcatattgatgtagtctatttttttaaagatctcttgaacgtaactaacattgacaa
tctttggtttgacgcggaaggtgaagaatttgcgaatgatttttttgatattttctatga
aaatggaaaattcgtgcaaagtggaatagatctttgtcaagttaacattgaaattcatat
aacatccgatgtcgctcacagaaaagaagaattcatgaagttcttgaaaagaataattca
agaaaaacgatttggggtgttttttggagatgcgttcggacatattagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGGACCTCATAATTTGTTCACA 679 647 372 Antisense
ATGTGACATTTGTCGGGGCGGACCC 220 45 464 Antisense
GCGGACCCAGTTCCACATAATGGTG 525 291 481 Antisense
GGTGACTTGTACTCTCAAATCGGAA 274 501 502 Antisense
GAAACTATTTCCCTTTGGCAATTGG 666 351 524 Antisense
TGCACGGGTTCTTGAAAACAGCGGA 548 575 570 Antisense
ACAGCGGATACATTGACACGGATAA 533 107 587 Antisense
AGATCTCTTGAACGTAACTAACATT 492 65 642 Antisense
TAACATCCGATGTCGCTCACAGAAA 121 639 791 Antisense
TGGGGTGTTTTTTGGAGATGCGTTC 645 551 864 Antisense
GGAGATGCGTTCGGACATATTAGGA 130 519 877 Antisense
Sequence Source Affymetrix Proprietary Database