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[183536_at]

Description Y4C6B.5 /REP_DB=WormBase Gene ID /WP=CE21309 /TR=Q9UAZ6 /GB=AAD14769.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 52      6grp_total > 51      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 527.5
(3)
P 		509.6
(2.2)
P 		523.3
(2.8)
P 		396.2
(-3)
P 		131
B 602.5
(3)
P 		452.9
(0.4)
P 		545.5
(2)
P 		262.4
(-3)
P 		340
C 598.7
(3)
P 		450.5
(-0.5)
P 		474
(0)
P 		348.2
(-3)
P 		251
avr 576.2
(3) 		471
(0.4) 		514.3
(1.5) 		335.6
(-3) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 449
1 2 3 4 5 6 range
A 840.9
(3)
P 		586.2
(-1.4)
P 		827.7
(2.8)
P 		695.3
(0.5)
P 		680.2
(0.2)
P 		497.1
(-3)
P 		344
B 589.6
(-3)
P 		739.5
(-0.5)
P 		945.6
(3)
P 		777.5
(0.2)
P 		658.2
(-1.8)
P 		620.4
(-2.5)
P 		356
C 508.6
(-3)
P 		747.7
(1.1)
P 		737.5
(0.9)
P 		859.8
(3)
P 		536
(-2.5)
P 		583.4
(-1.7)
P 		351
avr 646.4
(-1.2) 		691.1
(-0.2) 		836.9
(3) 		777.5
(1.7) 		624.8
(-1.7) 		567
(-3) 		270
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 192
(3)
P 		110.6
(-0.6)
P 		136.8
(0.5)
P 		58
(-3)
P 		134
B 192.1
(3)
P 		111.8
(-0.5)
P 		126.4
(0.1)
P 		55.9
(-3)
P 		136
C 198.2
(3)
P 		129.5
(0)
P 		165.2
(1.6)
P 		58.7
(-3)
P 		140
avr 194.1
(3) 		117.3
(-0.4) 		142.8
(0.7) 		57.5
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 155
(-0.7)
P 		208.5
(3)
P 		180.2
(1.1)
P 		176.3
(0.8)
P 		205.2
(2.8)
P 		121
(-3)
P 		88
B 205.2
(-3)
P 		246.1
(0.9)
P 		229.6
(-0.6)
P 		205.9
(-2.9)
P 		267.4
(3)
P 		231.3
(-0.5)
P 		62
C 188.5
(-1.3)
P 		228.1
(3)
P 		187.7
(-1.4)
P 		172.9
(-3)
P 		173.4
(-2.9)
P 		195.3
(-0.6)
P 		55
avr 182.9
(-2.9) 		227.6
(3) 		199.2
(-0.8) 		185
(-2.7) 		215.3
(1.4) 		182.5
(-3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183536_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10428
Sequence Type Exemplar sequence
Representative Public ID Y4C6B.5 NCBI
Target Description Y4C6B.5 /REP_DB=WormBase Gene ID /WP=CE21309 /TR=Q9UAZ6 /GB=AAD14769.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068380 NCBI Caenorhabditis elegans Y4C6B.5 (Y4C6B.5) mRNA, complete cds. 11/11 None
SNAP00000011095 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5319243:5324903:1 11/11 None
GENEFINDER00000011104 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5319243:5329216:1 11/11 None
Y4C6B.5 ENSEMBL cdna:known chromosome:CEL140:IV:5319242:5325033:1 gene:Y4C6B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5319248-5324909(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y4C6B.5
Entrez Gene 189356 Entrez gene
SwissProt Q9UAZ6 EMBL-EBI
WormBase CE31741 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.28538.1.S1_AT similar to CG30345-PA cfa
CANINE_2:CFAAFFX.28538.1.S1_S_AT similar to CG30345-PA cfa
DROSOPHILA_2:1627500_AT dm
CHICKEN:GGA.8993.1.S1_AT similar to Hypothetical protein MGC56400 gga
HU35KSUBD:RC_AA302636_S_AT similar to RIKEN cDNA 1110002C08 gene hs
U133_X3P:HS2.343553.2.S1_3P_AT similar to RIKEN cDNA 1110002C08 gene hs
U133_X3P:HS2.343553.1.S2_3P_A_AT similar to RIKEN cDNA 1110002C08 gene hs
U133_X3P:HS2.343553.1.S1_3P_A_AT similar to RIKEN cDNA 1110002C08 gene hs
HG-U133_PLUS_2:1552278_A_AT similar to RIKEN cDNA 1110002C08 gene hs
HG-U133_PLUS_2:1552279_A_AT similar to RIKEN cDNA 1110002C08 gene hs
HG-U133_PLUS_2:1558703_AT similar to RIKEN cDNA 1110002C08 gene hs
HG-U95B:51553_AT similar to RIKEN cDNA 1110002C08 gene hs
U133_X3P:HS.306884.0.S1_3P_X_AT Similar to RIKEN cDNA 1110002C08 gene hs
U133_X3P:HS.306884.0.S1_3P_AT Similar to RIKEN cDNA 1110002C08 gene hs
U133_X3P:HS.306884.0.A1_3P_X_AT Similar to RIKEN cDNA 1110002C08 gene hs
U133_X3P:HS.306884.0.A1_3P_AT Similar to RIKEN cDNA 1110002C08 gene hs
U133_X3P:234060_3P_AT Similar to RIKEN cDNA 1110002C08 gene hs
HG-U133_PLUS_2:233531_AT Similar to RIKEN cDNA 1110002C08 gene hs
HG-U133B:233531_AT Similar to RIKEN cDNA 1110002C08 gene hs
HG-U133_PLUS_2:234060_AT Similar to RIKEN cDNA 1110002C08 gene hs
HG-U133B:234060_AT Similar to RIKEN cDNA 1110002C08 gene hs
MU11KSUBA:AA274553_S_AT DNA segment, Chr 11, ERATO Doi 18, expressed mm
MG-U74AV2:94339_AT DNA segment, Chr 11, ERATO Doi 18, expressed mm
MOE430A:1426714_AT DNA segment, Chr 11, ERATO Doi 18, expressed mm
MOUSE430A_2:1426714_AT DNA segment, Chr 11, ERATO Doi 18, expressed mm
MOUSE430_2:1426714_AT DNA segment, Chr 11, ERATO Doi 18, expressed mm
MOE430A:1426715_S_AT DNA segment, Chr 11, ERATO Doi 18, expressed mm
MOUSE430A_2:1426715_S_AT DNA segment, Chr 11, ERATO Doi 18, expressed mm
MOUSE430_2:1426715_S_AT DNA segment, Chr 11, ERATO Doi 18, expressed mm
RG-U34C:RC_AI136848_AT similar to DNA segment, Chr 11, ERATO Doi 18, expressed (predicted) rn
RAE230A:1374073_AT similar to DNA segment, Chr 11, ERATO Doi 18, expressed (predicted) rn
RAT230_2:1374073_AT similar to DNA segment, Chr 11, ERATO Doi 18, expressed (predicted) rn
RAE230B:1393111_AT Similar to DNA segment, Chr 11, ERATO Doi 18, expressed (predicted) rn
RAT230_2:1393111_AT Similar to DNA segment, Chr 11, ERATO Doi 18, expressed (predicted) rn
RG-U34C:RC_AI102657_AT Similar to DNA segment, Chr 11, ERATO Doi 18, expressed (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAD14769 Hypothetical protein Y4C6B.5 [Caenorhabditis elegans] ref|NP_500781.2| Y4C6B.5 [Caenorhabditis elegans] 0.0
blast CAE72731 Hypothetical protein CBG19969 [Caenorhabditis briggsae] 0.0
blast T34014 hypothetical protein Y4C6B.4 - Caenorhabditis elegans 0.0
blast AAN73291 Hypothetical protein Y4C6B.4a [Caenorhabditis elegans] ref|NP_741396.1| Y4C6B.4a [Caenorhabditis elegans] 0.0
blast AAD14769 Hypothetical protein Y4C6B.5 [Caenorhabditis elegans] ref|NP_500781.2| Y4C6B.5 [Caenorhabditis elegans] 1.0E-154
blast CAE72731 Hypothetical protein CBG19969 [Caenorhabditis briggsae] 1.0E-127
blast CAE60770 Hypothetical protein CBG04458 [Caenorhabditis briggsae] 5.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500781.2 12 7-29,66-88,93-115,130-152,164-186,190-212,257-279,294-316,325-344,349-371,384-406,411-433
Y4C6B.5 12 7-29,66-88,93-115,130-152,164-186,190-212,257-279,294-316,325-344,349-371,384-406,411-433
SNAP00000011095 10 7-29,66-88,108-130,134-156,201-223,238-260,269-288,293-315,328-350,355-377
GENEFINDER00000011104 25 7-29,66-88,93-115,130-152,164-186,190-212,257-279,294-316,325-344,349-371,384-406,411-433,472-494,529-548,555-577,581-603,616-638,648-670,682-701,743-765,772-794,829-848,855-877,892-914,923-945
Sequence
Target Sequence 
>C. ELEGANS:183536_AT
gtattttccggtctctcagatattcaatattcatatcttcgttacaaattacaatgggga
gataagaagtatggatggttctctggactttcttatggtattacaactgcagcagtttta
ttcctgtacccattgttacgcatgaagttgatgtctgatggaatgttggccacattggga
ttatttttcaaaatgatctcgttgttcatgttcgcttttctgcagaatgaagttatggct
tattctattgcagtaattgtaatgtttaatcgatttgtgtcaactggattccgtgcattc
atttcatctctaatcgatatgcaagagcaaggaaaaattttctccgtgatttcacttttg
gaaggaattaccacacttgttgccacatcaatatataacaatgtatatccaaatacattg
acattctttccgggattactgtatcttatcagtgcagtcacattgctcatcccacttgca
attgtcagcacatcagacttcgtggtccgaactcatcgtccagaagtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTTTCCGGTCTCTCAGATATTC 202 451 772 Antisense
TGGATGGTTCTCTGGACTTTCTTAT 369 549 843 Antisense
ATTCCTGTACCCATTGTTACGCATG 474 7 891 Antisense
TTGTTCATGTTCGCTTTTCTGCAGA 61 707 973 Antisense
GGATTCCGTGCATTCATTTCATCTC 275 509 1057 Antisense
TTACCACACTTGTTGCCACATCAAT 588 681 1139 Antisense
CATTGACATTCTTTCCGGGATTACT 114 217 1187 Antisense
TCAGTGCAGTCACATTGCTCATCCC 274 623 1220 Antisense
GCTCATCCCACTTGCAATTGTCAGC 351 301 1236 Antisense
GTCAGCACATCAGACTTCGTGGTCC 162 467 1255 Antisense
TCCGAACTCATCGTCCAGAAGTCTC 82 597 1277 Antisense
Sequence Source Affymetrix Proprietary Database