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[183535_at]

Description F46C8.3 /REP_DB=WormBase Gene ID /WP=CE28334 /TR=Q9GYP5 /GB=AAF99942.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 51      6grp_total > 32      4grp_total > 44      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 361
1 2 3 4 range
A 481.9
(-2.6)
P 		732.1
(3)
P 		673.6
(1.7)
P 		466.2
(-3)
P 		266
B 603.5
(2.8)
P 		491.6
(-0.3)
P 		395
(-3)
P 		609.2
(3)
P 		214
C 755.5
(3)
P 		735.5
(2.6)
P 		459.7
(-3)
P 		459.9
(-3)
P 		296
avr 613.6
(1.4) 		653.1
(3) 		509.4
(-3) 		511.8
(-2.9) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 681
1 2 3 4 5 6 range
A 564.1
(1.1)
P 		667.2
(2.9)
P 		541.7
(0.7)
P 		675.8
(3)
P 		361.3
(-2.3)
P 		321.5
(-3)
P 		354
B 714
(2.6)
P 		584.4
(1)
P 		745.7
(3)
P 		486.7
(-0.3)
P 		517.4
(0.1)
P 		268.4
(-3)
P 		477
C 917
(3)
P 		507.5
(-0.6)
P 		722.4
(1.3)
P 		566.2
(-0.1)
P 		634.7
(0.5)
P 		236.2
(-3)
P 		681
avr 731.7
(3) 		586.4
(1.1) 		669.9
(2.2) 		576.2
(1) 		504.5
(0) 		275.4
(-3) 		456
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 175.5
(3)
P 		158.9
(2)
P 		176.1
(3)
P 		68.2
(-3)
P 		108
B 192.4
(3)
P 		121.4
(-1.2)
P 		91.5
(-3)
P 		129.8
(-0.7)
P 		101
C 250.1
(3)
P 		211.5
(1.7)
P 		160.2
(-0.1)
P 		77.5
(-3)
P 		173
avr 206
(3) 		163.9
(0.8) 		142.6
(-0.3) 		91.8
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 104
(-2)
P 		237.3
(3)
P 		118
(-1.5)
P 		171.4
(0.5)
P 		109
(-1.8)
P 		78.3
(-3)
P 		159
B 248.4
(3)
P 		194.5
(0.8)
P 		181.1
(0.3)
P 		128.9
(-1.8)
P 		210.2
(1.5)
P 		100.1
(-3)
P 		148
C 339.9
(3)
P 		154.8
(-1.3)
P 		183.9
(-0.6)
P 		113.9
(-2.2)
P 		205.4
(-0.1)
P 		79.1
(-3)
P 		261
avr 230.8
(3) 		195.5
(1.5) 		161
(0.1) 		138.1
(-0.8) 		174.9
(0.7) 		85.8
(-3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183535_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16719
Sequence Type Exemplar sequence
Representative Public ID F46C8.3 NCBI
Target Description F46C8.3 /REP_DB=WormBase Gene ID /WP=CE28334 /TR=Q9GYP5 /GB=AAF99942.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076871(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076871 NCBI Caenorhabditis elegans F46C8.3 (F46C8.3) mRNA, complete cds. 11/11 None
SNAP00000044525 ENSEMBL cdna:SNAP chromosome:CEL140:X:7525517:7527197:1 11/11 None
GENEFINDER00000044539 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7525517:7527197:1 11/11 None
F46C8.3 ENSEMBL cdna:known chromosome:CEL140:X:7525517:7527197:1 gene:F46C8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7525515-7527196(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46C8.3
Entrez Gene 181011 Entrez gene
SwissProt Q9GYP5 EMBL-EBI
WormBase CE28334 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99942 Hypothetical protein F46C8.3 [Caenorhabditis elegans] ref|NP_509272.1| F46C8.3 [Caenorhabditis elegans] 8.0E-94
blast CAE70229 Hypothetical protein CBG16716 [Caenorhabditis briggsae] 6.0E-74
blast T34265 hypothetical protein F46C8.3 - Caenorhabditis elegans 5.0E-72
blast AAF99942 Hypothetical protein F46C8.3 [Caenorhabditis elegans] ref|NP_509272.1| F46C8.3 [Caenorhabditis elegans] 6.0E-56
blast T34265 hypothetical protein F46C8.3 - Caenorhabditis elegans 9.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509272.1 1 53-75
F46C8.3 1 53-75
GENEFINDER00000044539 1 53-75
Sequence
Target Sequence 
>C. ELEGANS:183535_AT
ggcagcggccagagcatgaatcatagtcctggagacatgatggatcaccaccaataccct
gatatgaacatgatcttcaaaggaatcccaaaaatgattcagatagaagaaggatatcca
ccagctgccccgagatactattactcttcgcagtatgctccagaaccatgggaccgacca
aaacacacatacagtccatccattgaagagaagaaacaactggaatgcaggaacagcagt
ccggagttcaaaggaaacggttctgtcaattacaagccatacacgaatgagtcaacggag
atgtcaccggaaaatgagaagaaaacgtcattgagcaacgatatgtcacatcggggagct
acaaccgccagtgtaccaaagaggtcactagatccagtcaagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAGCGGCCAGAGCATGAATCATA 76 533 16 Antisense
GATCACCACCAATACCCTGATATGA 501 421 58 Antisense
AGAAGAAGGATATCCACCAGCTGCC 680 73 120 Antisense
GCCCCGAGATACTATTACTCTTCGC 665 285 142 Antisense
TACTCTTCGCAGTATGCTCCAGAAC 88 647 157 Antisense
TGGGACCGACCAAAACACACATACA 661 553 184 Antisense
ACACACATACAGTCCATCCATTGAA 404 111 198 Antisense
AACGGTTCTGTCAATTACAAGCCAT 527 143 271 Antisense
TATGTCACATCGGGGAGCTACAACC 677 655 357 Antisense
GCTACAACCGCCAGTGTACCAAAGA 480 301 373 Antisense
AGAGGTCACTAGATCCAGTCAAGTT 421 67 395 Antisense
Sequence Source Affymetrix Proprietary Database