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[183534_at]

Description C39B5.8 /REP_DB=WormBase Gene ID /WP=CE20555 /TR=Q9N5X3 /GB=AAF39764.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 0.7
(-3)
A 		28.4
(3)
A 		0.8
(-3)
A 		4.3
(-2.2)
A 		28
B 3.4
(-2.3)
A 		2.3
(-3)
A 		11.1
(3)
A 		6.6
(-0.1)
A 		9
C 26.3
(3)
A 		5
(-2.4)
A 		2.6
(-3)
A 		14.4
(-0)
A 		24
avr 10.1
(1.5) 		11.9
(3) 		4.8
(-3) 		8.4
(0) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 1.1
(-3)
A 		15
(0.2)
A 		27.6
(3)
A 		1.7
(-2.8)
A 		0.9
(-3)
A 		6.9
(-1.7)
A 		27
B 2.3
(-1.9)
A 		3.3
(-1.3)
A 		1.5
(-2.4)
A 		3
(-1.5)
A 		0.6
(-3)
A 		10
(3)
A 		9
C 3.1
(-2.6)
A 		3.7
(-2.4)
A 		2.3
(-2.8)
A 		1.5
(-3)
A 		23.9
(3)
A 		9.6
(-0.8)
A 		22
avr 2.2
(-2.9) 		7.3
(0.7) 		10.5
(3) 		2.1
(-3) 		8.5
(1.6) 		8.8
(1.8) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.2
(-3)
A 		6.2
(3)
A 		0.2
(-3)
A 		0.6
(-2.6)
A 		6
B 1.1
(-1.5)
A 		0.6
(-3)
A 		2.6
(3)
A 		1.4
(-0.6)
A 		2
C 8.7
(3)
A 		1.4
(-2.6)
A 		0.9
(-3)
A 		2.4
(-1.8)
A 		8
avr 3.3
(3) 		2.7
(1.3) 		1.2
(-3) 		1.5
(-2.1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.2
(-3)
A 		5.3
(2.3)
A 		6
(3)
A 		0.4
(-2.8)
A 		0.3
(-2.9)
A 		1.7
(-1.4)
A 		6
B 0.8
(-2.1)
A 		1.1
(-1.6)
A 		0.4
(-2.8)
A 		0.8
(-2.1)
A 		0.3
(-3)
A 		3.7
(3)
A 		3
C 1.1
(-2.4)
A 		1.1
(-2.4)
A 		0.6
(-2.8)
A 		0.3
(-3)
A 		7.7
(3)
A 		3.2
(-0.6)
A 		7
avr 0.7
(-2.5) 		2.5
(2) 		2.3
(1.5) 		0.5
(-3) 		2.8
(2.8) 		2.9
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183534_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8181
Sequence Type Exemplar sequence
Representative Public ID C39B5.8 NCBI
Target Description C39B5.8 /REP_DB=WormBase Gene ID /WP=CE20555 /TR=Q9N5X3 /GB=AAF39764.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065111(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065111 NCBI Caenorhabditis elegans C39B5.8 (C39B5.8) mRNA, complete cds. 11/11 None
SNAP00000012608 ENSEMBL cdna:SNAP chromosome:CEL140:III:2207597:2233804:-1 11/11 None
GENEFINDER00000012622 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2217192:2219714:-1 11/11 None
C39B5.8 ENSEMBL cdna:known chromosome:CEL140:III:2217192:2219714:-1 gene:C39B5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2217191-2219714(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C39B5.8
Entrez Gene 183327 Entrez gene
SwissProt Q9N5X3 EMBL-EBI
WormBase CE20555 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39764 Hypothetical protein C39B5.8 [Caenorhabditis elegans] ref|NP_497512.1| C39B5.8 [Caenorhabditis elegans] 0.0
blast AAF39764 Hypothetical protein C39B5.8 [Caenorhabditis elegans] ref|NP_497512.1| C39B5.8 [Caenorhabditis elegans] 1.0E-150
blast AAF39772 Hypothetical protein C39B5.9 [Caenorhabditis elegans] ref|NP_497517.1| C39B5.9 [Caenorhabditis elegans] 4.0E-93
blast AAC04395 Hypothetical protein C17B7.11 [Caenorhabditis elegans] ref|NP_503929.1| C17B7.11 [Caenorhabditis elegans] 2.0E-48
blast CAB03489 Hypothetical protein ZC47.4 [Caenorhabditis elegans] ref|NP_497367.1| ZC47.4 [Caenorhabditis elegans] 4.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.4E-58
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.6E-7
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.5E-36
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.4E-58
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0018
Sequence
Target Sequence 
>C. ELEGANS:183534_AT
tgaaccatgcatcttcatttgttctgcaaaactttacaagaaataaaaacgaggttctca
aatctcttgtgaatgttttggagaacggaggaagcgttcacgtgaagaaaataaatcttc
tatacctaacattcaacgaaattctttcaatattgccgtgttttgaagcggacgtgctgg
acgatattaattgtttgctcattggcaaggttcttgattttgaaaggatcactttgctgg
atcagtggaaatgtgcaaaaagcttccgatccacgtattatggtgttacaaattgttacc
tgacagcaattgatcatttctttcatttcgaagagttctgtacaacgattgttcaatttc
cacaagaagacgcaattaaaattcgagatgacctcttgaaaagaagtagtttccggcgtt
gcattatttggtttgaccctggaaatctgatcgaatttgcaagattgtttcaaccagatt
ttactattggtgatgaaatggatattgagtttacaagcagtggagctaatttcaaacttc
gtcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACCATGCATCTTCATTTGTTCT 700 573 392 Antisense
ACGAGGTTCTCAAATCTCTTGTGAA 11 95 440 Antisense
ATCTTCTATACCTAACATTCAACGA 639 31 506 Antisense
GAAATTCTTTCAATATTGCCGTGTT 362 363 529 Antisense
TGCCGTGTTTTGAAGCGGACGTGCT 504 583 545 Antisense
AAAAGCTTCCGATCCACGTATTATG 81 133 649 Antisense
GCAATTGATCATTTCTTTCATTTCG 551 323 697 Antisense
GAAGTAGTTTCCGGCGTTGCATTAT 166 337 794 Antisense
GGCGTTGCATTATTTGGTTTGACCC 301 541 806 Antisense
GGTTTGACCCTGGAAATCTGATCGA 565 503 821 Antisense
GGAGCTAATTTCAAACTTCGTCGTT 113 521 913 Antisense
Sequence Source Affymetrix Proprietary Database