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[183533_s_at]

Description ZC411.1 /REP_DB=WormBase Gene ID /WP=CE07602 /TR=Q23301 /GB=AAA96111.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 9.7
(-2.1)
A 		28
(3)
A 		6.5
(-3)
A 		7.4
(-2.7)
A 		22
B 5.7
(-3)
A 		5.5
(-3)
A 		7.8
(-2.5)
A 		30.8
(3)
A 		25
C 10.1
(-0.1)
A 		16.2
(3)
A 		4.2
(-3)
A 		7.9
(-1.2)
A 		12
avr 8.5
(-1.7) 		16.6
(3) 		6.2
(-3) 		15.4
(2.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 9.1
(3)
A 		8
(1.9)
A 		5.1
(-1.1)
A 		6.7
(0.5)
A 		3.9
(-2.4)
A 		3.3
(-3)
A 		6
B 6.9
(-1.1)
A 		16.5
(3)
A 		4.4
(-2.1)
A 		4.7
(-2)
A 		2.4
(-3)
A 		16.2
(2.9)
A 		14
C 9.2
(-0.2)
A 		15.9
(3)
A 		10.6
(0.5)
A 		3.4
(-3)
A 		3.8
(-2.8)
A 		4.5
(-2.5)
A 		13
avr 8.4
(-0) 		13.5
(3) 		6.7
(-1) 		4.9
(-2.1) 		3.4
(-3) 		8
(-0.3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.5
(-0.1)
A 		6.1
(3)
A 		1.7
(-2.3)
A 		1.1
(-3)
A 		5
B 1.8
(-2.5)
A 		1.4
(-3)
A 		1.8
(-2.5)
A 		6.6
(3)
A 		5
C 3.4
(0.7)
A 		4.7
(3)
A 		1.5
(-2.6)
A 		1.3
(-3)
A 		3
avr 2.9
(0) 		4.1
(3) 		1.7
(-3) 		3
(0.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.7
(-0.3)
A 		2.8
(3)
A 		1.1
(-2.1)
A 		1.7
(-0.3)
A 		1.2
(-1.8)
A 		0.8
(-3)
A 		2
B 2.4
(-1.3)
A 		5.5
(2.4)
A 		1.1
(-2.9)
A 		1.2
(-2.8)
A 		1
(-3)
A 		6
(3)
A 		5
C 3.4
(1)
A 		4.8
(3)
A 		2.7
(-0.1)
A 		0.7
(-3)
A 		1.2
(-2.3)
A 		1.5
(-1.8)
A 		4
avr 2.5
(-0.5) 		4.4
(3) 		1.6
(-2.1) 		1.2
(-2.8) 		1.1
(-3) 		2.8
(0.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183533_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11652
Sequence Type Exemplar sequence
Representative Public ID ZC411.1 NCBI
Target Description ZC411.1 /REP_DB=WormBase Gene ID /WP=CE07602 /TR=Q23301 /GB=AAA96111.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072886(11), NM_072871(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072886 NCBI Caenorhabditis elegans ZC411.1 (ZC411.1) mRNA, complete cds. 11/11 None
NM_072871 NCBI Caenorhabditis elegans F07B7.7 (F07B7.7) mRNA, complete cds. 11/11 None
GENEFINDER00000015141 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8837341:8844972:1 11/11 None
F07B7.7 ENSEMBL cdna:known chromosome:CEL140:V:8838198:8839297:1 gene:F07B7.7 11/11 None
ZC411.1 ENSEMBL cdna:known chromosome:CEL140:V:8880292:8881391:1 gene:ZC411.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010869 7/11 Cross Hyb Matching Probes None
SNAP00000015085 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl F07B7.7
ZC411.1
Entrez Gene 184115 Entrez gene
191159 Entrez gene
SwissProt Q23301 EMBL-EBI
WormBase CE07602 Wormbase
CE07602 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84516 Hypothetical protein F07B7.7 [Caenorhabditis elegans] gb|AAA96111.1| Hypothetical protein ZC411.1 [Caenorhabditis elegans] ref|NP_505287.1| ZC411.1 [Caenorhabditis elegans] ref|NP_505272.1| F07B7.7 [Caenorhabditis elegans] 0.0
blast AAK84515 Hypothetical protein F07B7.6 [Caenorhabditis elegans] ref|NP_505273.1| F07B7.6 [Caenorhabditis elegans] 0.0
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 0.0
blast T27790 hypothetical protein ZK228.2 - Caenorhabditis elegans 0.0
blast CAB04993 Hypothetical protein ZK228.1 [Caenorhabditis elegans] ref|NP_507612.1| ZK228.1 [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.2E-95
Sequence
Target Sequence 
>C. ELEGANS:183533_S_AT
tacgtgctgtttcaaccacatccatttggggatgagtctacacggtgtttagacagattt
ggaaataccaaccgctactggtttacgcttccaatctctggcgaatacacccttcttgaa
caacttcaagaagacgaggaaaggagacttaccttccgatttacgcctacaaaccggtgc
atttgggaatccccacttcacgatgtaacgaaactcagacgagccctgaatactccactt
cccaccggacaacaagctttgcgactacgattggcatggatgattaacctacttactggt
cagaaacctcccgaaaccgtcttccaaggtacatacgttgaaacacgtaacttcctgaag
atagtacgaggagcgactatgctggtcctgggcatccgtgaagaagcctcaactgtcaag
gttgagctttcgacttgtgtacgtcacatcgcaacatcatccgctagaggccacaattta
gtcctaccgacttttaccctctttacgatgtactcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGTGCTGTTTCAACCACATCCAT 612 647 433 Antisense
TACCAACCGCTACTGGTTTACGCTT 130 649 498 Antisense
GTTTACGCTTCCAATCTCTGGCGAA 625 449 513 Antisense
GAATACACCCTTCTTGAACAACTTC 572 319 535 Antisense
GTGCATTTGGGAATCCCCACTTCAC 608 477 609 Antisense
TCCCACCGGACAACAAGCTTTGCGA 524 597 672 Antisense
TGGTCCTGGGCATCCGTGAAGAAGC 14 551 815 Antisense
GAGCTTTCGACTTGTGTACGTCACA 59 389 856 Antisense
TCACATCGCAACATCATCCGCTAGA 521 625 876 Antisense
GAGGCCACAATTTAGTCCTACCGAC 39 405 899 Antisense
TTTACCCTCTTTACGATGTACTCCA 16 673 925 Antisense
Sequence Source Affymetrix Proprietary Database