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[183532_at] 7TM chemoreceptor, srsx family

Description C13D9.5 /REP_DB=WormBase Gene ID /WP=CE08138 /TR=O16239 /GB=AAB65306.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 24      6grp_cgc > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 1.7
(-3)
A 		3.3
(-2.2)
A 		14.4
(3)
A 		12.9
(2.3)
A 		13
B 16
(-1)
A 		23.8
(0.3)
A 		40
(3)
A 		4.1
(-3)
A 		36
C 2.8
(-3)
A 		5.1
(-2.7)
A 		3.6
(-2.9)
A 		53.2
(3)
M 		50
avr 6.8
(-3) 		10.7
(-1.6) 		19.3
(1.5) 		23.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 7.1
(-3)
A 		9.9
(-2.2)
A 		27.2
(3)
A 		12.3
(-1.4)
A 		24.9
(2.3)
A 		22.6
(1.6)
A 		20
B 10.1
(-2.6)
A 		20.6
(2.7)
A 		21.2
(3)
A 		20.4
(2.6)
A 		15.2
(-0)
A 		9.3
(-3)
A 		12
C 4.3
(-2.5)
A 		5.5
(-2.1)
A 		2.7
(-3)
A 		4.1
(-2.6)
A 		10.3
(-0.6)
A 		22.1
(3)
A 		19
avr 7.2
(-3) 		12
(-0.3) 		17
(2.4) 		12.3
(-0.2) 		16.8
(2.3) 		18
(3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.6
(-3)
A 		0.7
(-2.8)
A 		3.8
(3)
A 		1.9
(-0.6)
A 		3
B 5.1
(-0)
A 		5.9
(0.6)
A 		9.3
(3)
A 		0.9
(-3)
A 		8
C 0.9
(-3)
A 		1.5
(-2.6)
A 		1.2
(-2.8)
A 		9
(3)
M 		8
avr 2.2
(-3) 		2.7
(-1.8) 		4.8
(3) 		3.9
(0.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.3
(-3)
A 		3.5
(-0.9)
A 		5.9
(1.5)
A 		3.1
(-1.3)
A 		7.5
(3)
A 		5.5
(1.1)
A 		6
B 3.5
(-3)
A 		6.9
(3)
A 		5.1
(-0.2)
A 		5.4
(0.4)
A 		6.2
(1.8)
A 		3.5
(-3)
A 		3
C 1.6
(-2.2)
A 		1.7
(-2.1)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		3.3
(-0.7)
A 		7.4
(3)
A 		7
avr 2.1
(-3) 		4
(0.2) 		3.9
(-0) 		3.1
(-1.3) 		5.7
(3) 		5.5
(2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183532_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14977
Sequence Type Exemplar sequence
Representative Public ID C13D9.5 NCBI
Target Description C13D9.5 /REP_DB=WormBase Gene ID /WP=CE08138 /TR=O16239 /GB=AAB65306.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071938 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-12) (srsx-12) mRNA, complete cds. 11/11 None
GENEFINDER00000031115 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4979761:4980787:-1 11/11 None
C13D9.5 ENSEMBL cdna:known chromosome:CEL140:V:4979761:4980787:-1 gene:C13D9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4979760-4980787(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-12
Ensembl C13D9.5
Entrez Gene 182573 Entrez gene
SwissProt O16239 EMBL-EBI
WormBase CE08138 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65306 Serpentine receptor, class sx protein 12 [Caenorhabditis elegans] ref|NP_504339.1| Serpentine Receptor, class SX family member (srsx-12) [Caenorhabditis elegans] 1.0E-151
blast AAB65310 Serpentine receptor, class sx protein 13 [Caenorhabditis elegans] ref|NP_504340.1| Serpentine Receptor, class SX family member (srsx-13) [Caenorhabditis elegans] 2.0E-87
blast CAE64038 Hypothetical protein CBG08636 [Caenorhabditis briggsae] 1.0E-77
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504339.1 7 10-32,52-71,86-108,121-143,163-185,206-228,239-261
C13D9.5 7 10-32,52-71,86-108,121-143,163-185,206-228,239-261
GENEFINDER00000031115 7 10-32,52-71,86-108,121-143,163-185,206-228,239-261
Sequence
Target Sequence 
>C. ELEGANS:183532_AT
atatattttcccaggcagctcaaggattattaatgctattgattatgatagatgtgctga
tttttgtcaagtttccattattctatagaaatcttgcaaattggaaatatttttccagtt
gtttcattttcgtttttctgtattcttcaactgtgattttatacggatatcttactacaa
atgatgatataattcatgcttgcaatccgttatttgcgttcgcattaacatctagatata
ctttcaaaagttcaatgctcattttgagcttattgactttaattatctatatagttatga
taaggattttcaagaataaaaataaaagtcgcaacaaggactctataaaaatcatgagac
gtcttcagctttctgtagttatttttgtttttacgtggctggttagtcaagccttggcaa
tggttttcctgcacgatgatggatccatacattgggagaaaattgttttcgttcataatt
cctttttcattgtcctatcctacagcaatacattttacgtgacaatgtggaaaagtggag
agtatcgaaaaaatttccgttcggtgtggggattgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATATTTTCCCAGGCAGCTCAAGG 235 13 266 Antisense
TTTTCTGTATTCTTCAACTGTGATT 251 677 399 Antisense
TATAATTCATGCTTGCAATCCGTTA 295 661 453 Antisense
CAATCCGTTATTTGCGTTCGCATTA 634 179 468 Antisense
GAGACGTCTTCAGCTTTCTGTAGTT 481 391 621 Antisense
GTGGCTGGTTAGTCAAGCCTTGGCA 494 489 660 Antisense
AGCCTTGGCAATGGTTTTCCTGCAC 98 85 675 Antisense
TTTTCGTTCATAATTCCTTTTTCAT 473 675 731 Antisense
ATAATTCCTTTTTCATTGTCCTATC 68 25 740 Antisense
TTGTCCTATCCTACAGCAATACATT 159 703 755 Antisense
TTTCCGTTCGGTGTGGGGATTGAAT 655 667 819 Antisense
Sequence Source Affymetrix Proprietary Database