[Home] | [Total List]

[183531_at]

Description M02D8.2 /REP_DB=WormBase Gene ID /WP=CE04758 /TR=Q21462 /GB=AAA82380.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 1.1
(-3)
A 		3.1
(-2.7)
A 		4.4
(-2.5)
A 		39.8
(3)
A 		39
B 8.6
(-3)
A 		8.5
(-3)
A 		30.7
(3)
A 		28.1
(2.3)
A 		22
C 34.7
(-0.1)
A 		28.9
(-0.6)
A 		2
(-3)
A 		68.9
(3)
A 		67
avr 14.8
(-2.6) 		13.5
(-2.8) 		12.4
(-3) 		45.6
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 42.5
(2)
A 		1.9
(-3)
A 		10.2
(-2)
A 		21.6
(-0.6)
A 		33.3
(0.8)
A 		50.9
(3)
A 		49
B 23.3
(-1)
A 		7.8
(-2.6)
A 		4.3
(-3)
A 		9.1
(-2.5)
A 		60.7
(3)
P 		38.6
(0.6)
A 		56
C 3.4
(-3)
A 		15.1
(-0)
A 		4.9
(-2.6)
A 		23.1
(2.1)
A 		7.6
(-1.9)
A 		26.8
(3)
A 		23
avr 23.1
(0.1) 		8.3
(-2.7) 		6.5
(-3) 		17.9
(-0.9) 		33.9
(2.1) 		38.8
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.4
(-3)
A 		0.7
(-2.7)
A 		1.2
(-2.1)
A 		5.8
(3)
A 		5
B 2.7
(-2.3)
A 		2.1
(-3)
A 		7.1
(3)
A 		6
(1.7)
A 		5
C 11.5
(2.9)
A 		8.3
(1.2)
A 		0.7
(-3)
A 		11.6
(3)
A 		11
avr 4.9
(-0.6) 		3.7
(-2.1) 		3
(-3) 		7.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 7.8
(0.6)
A 		0.7
(-3)
A 		2.2
(-2.2)
A 		5.5
(-0.5)
A 		10
(1.8)
A 		12.4
(3)
A 		12
B 8.1
(-1.2)
A 		2.6
(-2.6)
A 		1
(-3)
A 		2.4
(-2.6)
A 		24.7
(3)
P 		14.4
(0.4)
A 		24
C 1.2
(-3)
A 		4.6
(-0.4)
A 		1.3
(-2.9)
A 		4.7
(-0.3)
A 		2.5
(-2)
A 		9
(3)
A 		8
avr 5.7
(-0.7) 		2.6
(-2.4) 		1.5
(-3) 		4.2
(-1.5) 		12.4
(3) 		11.9
(2.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183531_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16529
Sequence Type Exemplar sequence
Representative Public ID M02D8.2 NCBI
Target Description M02D8.2 /REP_DB=WormBase Gene ID /WP=CE04758 /TR=Q21462 /GB=AAA82380.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077081
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000039676 ENSEMBL cdna:SNAP chromosome:CEL140:X:8739676:8740543:1 None
GENEFINDER00000039686 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8739676:8740543:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077081 8/11 Cross Hyb Matching Probes None
M02D8.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8739674-8740542(+) 85.91 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509482 M02D8.2 [Caenorhabditis elegans] gb|AAA82380.2| Hypothetical protein M02D8.2 [Caenorhabditis elegans] 5.0E-38
Sequence
Target Sequence 
>C. ELEGANS:183531_AT
caccgtcagacgacctcagatgggtcccaatccccaatgaggctctagaacactggcaaa
atggcaacgttggagtcatgatctctccgggtccaggagagtactactatgcttcccgag
aagaatacgaggaggcagtaatgtcgggtaaacatccaaacaacgaatgggtggatggag
acatcataagactggttttcaataactcccccactggcgctacttcacatttatttctaa
acaatatatatatacatataatacttctctttcagccagtaatagccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCGTCAGACGACCTCAGATGGGT 168 201 62 Antisense
AGACGACCTCAGATGGGTCCCAATC 440 71 69 Antisense
CCCAATCCCCAATGAGGCTCTAGAA 668 257 87 Antisense
GGCTCTAGAACACTGGCAAAATGGC 134 537 102 Antisense
GGCAACGTTGGAGTCATGATCTCTC 264 535 124 Antisense
TCATGATCTCTCCGGGTCCAGGAGA 172 623 137 Antisense
GGAGAGTACTACTATGCTTCCCGAG 191 519 157 Antisense
GAGGAGGCAGTAATGTCGGGTAAAC 376 403 190 Antisense
GCGCTACTTCACATTTATTTCTAAA 674 287 278 Antisense
ACATATAATACTTCTCTTTCAGCCA 376 105 315 Antisense
TCTCTTTCAGCCAGTAATAGCCAAC 153 611 327 Antisense
Sequence Source Affymetrix Proprietary Database