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[183530_at]

Description F40G9.6 /REP_DB=WormBase Gene ID /WP=CE19853 /TR=Q9TZ73 /GB=AAC68795.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 14.5
(-3)
A 		64
(3)
A 		34.7
(-0.6)
A 		49.8
(1.3)
A 		50
B 16.6
(-3)
A 		23.7
(-1.5)
A 		28.8
(-0.4)
A 		45.3
(3)
P 		29
C 4.1
(-3)
A 		14.9
(-2)
A 		24.4
(-1.1)
A 		67.9
(3)
P 		64
avr 11.7
(-3) 		34.2
(0.2) 		29.3
(-0.5) 		54.3
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 49.7
(3)
A 		40.6
(1.7)
A 		6.6
(-3)
A 		31
(0.4)
A 		9.1
(-2.7)
A 		21.6
(-0.9)
A 		43
B 50.9
(2.2)
A 		30.7
(-0)
A 		57.7
(3)
A 		7.5
(-2.6)
A 		4.3
(-3)
A 		38.9
(0.9)
A 		53
C 59.3
(2.8)
A 		60.7
(3)
A 		11.7
(-3)
A 		25.6
(-1.3)
A 		21.5
(-1.8)
A 		60.5
(3)
A 		49
avr 53.3
(3) 		44
(1.7) 		25.3
(-1) 		21.4
(-1.6) 		11.6
(-3) 		40.3
(1.1) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5.3
(-3)
A 		13.9
(3)
A 		9.1
(-0.3)
A 		7.3
(-1.6)
A 		9
B 5.3
(-3)
A 		5.9
(-2.2)
A 		6.7
(-1.1)
A 		9.7
(3)
P 		4
C 1.3
(-3)
A 		4.3
(-1.2)
A 		8.5
(1.2)
A 		11.5
(3)
P 		10
avr 4
(-3) 		8
(1.4) 		8.1
(1.5) 		9.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 9.2
(0.6)
A 		14.4
(3)
A 		1.4
(-3)
A 		7.9
(0)
A 		2.8
(-2.4)
A 		5.3
(-1.2)
A 		13
B 17.7
(3)
A 		10.2
(0.2)
A 		14
(1.6)
A 		2
(-2.9)
A 		1.7
(-3)
A 		14.5
(1.8)
A 		16
C 22
(3)
A 		18.5
(1.9)
A 		3
(-3)
A 		5.2
(-2.3)
A 		7
(-1.7)
A 		20.2
(2.4)
A 		19
avr 16.3
(3) 		14.4
(2.1) 		6.1
(-1.9) 		5
(-2.4) 		3.8
(-3) 		13.3
(1.6) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183530_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8180
Sequence Type Exemplar sequence
Representative Public ID F40G9.6 NCBI
Target Description F40G9.6 /REP_DB=WormBase Gene ID /WP=CE19853 /TR=Q9TZ73 /GB=AAC68795.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064769 NCBI Caenorhabditis elegans F40G9.6 (F40G9.6) mRNA, complete cds. 11/11 None
F40G9.6 ENSEMBL cdna:known chromosome:CEL140:III:179541:180139:1 gene:F40G9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021785 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:179540-180139(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40G9.6
Entrez Gene 185555 Entrez gene
SwissProt Q9TZ73 EMBL-EBI
WormBase CE19853 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68795 Hypothetical protein F40G9.6 [Caenorhabditis elegans] ref|NP_497170.1| F40G9.6 [Caenorhabditis elegans] 2.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497170.1 1 4-26
F40G9.6 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:183530_AT
tgctgctcctcaggtaagcctaattttttttggcatttctctaattttcattgccaccgt
tttacaggaacaaaaccaacttttcggtactaaattgagtgctcttaaaacagctattga
agaaattcacgaaaacgtagagaagatcatgggcaacttcacagactcagaaaaatccga
cgtgggaaaaacatttgacaatgttgaatatttattggaaaaacttcgatatactaattt
agaagatctttctatgaagacgatcacaaaagttttgagagaagtactgaatcttcctga
caattttaaggtgttcaatattttcataacagacgtggaagatgttcttaaaaagttgat
caaattccttgaagacttgcccgttcttacattggtcaacgacattattcccattatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGCTCCTCAGGTAAGCCTAATT 51 583 24 Antisense
TTTTTTGGCATTTCTCTAATTTTCA 650 675 49 Antisense
TTTCTCTAATTTTCATTGCCACCGT 4 673 59 Antisense
TCATTGCCACCGTTTTACAGGAACA 184 619 71 Antisense
TTCGGTACTAAATTGAGTGCTCTTA 228 695 106 Antisense
GATCATGGGCAACTTCACAGACTCA 377 421 168 Antisense
CAGACTCAGAAAAATCCGACGTGGG 446 203 185 Antisense
GAGAAGTACTGAATCTTCCTGACAA 560 391 302 Antisense
CAAATTCCTTGAAGACTTGCCCGTT 9 193 384 Antisense
TTGCCCGTTCTTACATTGGTCAACG 504 695 400 Antisense
GGTCAACGACATTATTCCCATTATG 183 503 417 Antisense
Sequence Source Affymetrix Proprietary Database