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[183527_s_at]

Description C14C6.5 /REP_DB=WormBase Gene ID /WP=CE08160 /TR=O44667 /GB=AAB94263.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 49      6grp_total > 96      4grp_total > 60      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12105
1 2 3 4 range
A 9910.4
(1.9)
P 		12213.6
(3)
P 		11667.6
(2.7)
P 		166.6
(-3)
P 		12047
B 9542.8
(1.8)
P 		11903.9
(3)
P 		10796.6
(2.4)
P 		108.7
(-3)
P 		11795
C 9608.3
(2.9)
P 		9799.2
(3)
P 		9376.9
(2.7)
P 		138.8
(-3)
P 		9660
avr 9687.2
(2.1) 		11305.6
(3) 		10613.7
(2.6) 		138
(-3) 		11168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3407
1 2 3 4 5 6 range
A 4419
(-3)
P 		4603.5
(-2.6)
P 		4692.7
(-2.4)
P 		5875.9
(0.2)
P 		5936.9
(0.3)
P 		7169.7
(3)
P 		2751
B 3839.1
(-3)
P 		4386
(-1.7)
P 		5358.5
(0.6)
P 		4940.2
(-0.4)
P 		5981.1
(2)
P 		6384.2
(3)
P 		2545
C 4055.9
(-3)
P 		4335.4
(-2.5)
P 		5124.4
(-1)
P 		5730.2
(0.1)
P 		6117.4
(0.9)
P 		7246
(3)
P 		3190
avr 4104.7
(-3) 		4441.6
(-2.3) 		5058.5
(-1) 		5515.4
(-0) 		6011.8
(1) 		6933.3
(3) 		2829
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3585
1 2 3 4 range
A 3608.4
(3)
P 		2651.2
(1.4)
P 		3050.1
(2.1)
P 		24.4
(-3)
P 		3584
B 3043.1
(3)
P 		2940
(2.8)
P 		2501.8
(1.9)
P 		23.2
(-3)
P 		3020
C 3180.6
(2.8)
P 		2817.3
(2.2)
P 		3268.1
(3)
P 		23.4
(-3)
P 		3245
avr 3277.4
(3) 		2802.8
(2.1) 		2940
(2.4) 		23.7
(-3) 		3254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1616
1 2 3 4 5 6 range
A 814.6
(-3)
P 		1637.2
(2.1)
P 		1022
(-1.7)
P 		1490.3
(1.2)
P 		1791.5
(3)
P 		1745.6
(2.7)
P 		977
B 1335.8
(-2.8)
P 		1459.9
(-2.2)
P 		1301.2
(-3)
P 		1308.5
(-3)
P 		2430.1
(3)
P 		2380.6
(2.7)
P 		1129
C 1503.4
(-1.3)
P 		1322.8
(-2.2)
P 		1304.2
(-2.3)
P 		1152.3
(-3)
P 		1979.5
(0.9)
P 		2425.6
(3)
P 		1273
avr 1217.9
(-2.9) 		1473.3
(-1.4) 		1209.1
(-3) 		1317
(-2.3) 		2067
(2.3) 		2183.9
(3) 		975
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183527_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15665
Sequence Type Exemplar sequence
Representative Public ID C14C6.5 NCBI
Target Description C14C6.5 /REP_DB=WormBase Gene ID /WP=CE08160 /TR=O44667 /GB=AAB94263.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070837(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070837 NCBI Caenorhabditis elegans C14C6.5 (C14C6.5) mRNA, complete cds. 11/11 A 
SNAP00000017691 ENSEMBL cdna:SNAP chromosome:CEL140:V:536476:537204:1 11/11 None
GENEFINDER00000017705 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:536476:541262:1 11/11 None
C14C6.5 ENSEMBL cdna:known chromosome:CEL140:V:536476:537315:1 gene:C14C6.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:536475-537315(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14C6.5
Entrez Gene 178574 Entrez gene
SwissProt O44667 EMBL-EBI
WormBase CE08160 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94262 Hypothetical protein C14C6.4 [Caenorhabditis elegans] ref|NP_503239.1| C14C6.4 [Caenorhabditis elegans] 1.0E-161
blast AAB69951 Hypothetical protein ZK488.4 [Caenorhabditis elegans] ref|NP_503258.1| ZK488.4 [Caenorhabditis elegans] 1.0E-119
blast AAB94263 Hypothetical protein C14C6.5 [Caenorhabditis elegans] ref|NP_503238.1| C14C6.5 [Caenorhabditis elegans] 1.0E-102
blast AAB94263 Hypothetical protein C14C6.5 [Caenorhabditis elegans] ref|NP_503238.1| C14C6.5 [Caenorhabditis elegans] 3.0E-91
blast AAB94263 Hypothetical protein C14C6.5 [Caenorhabditis elegans] ref|NP_503238.1| C14C6.5 [Caenorhabditis elegans] 5.0E-90
blast AAB94260 Hypothetical protein C14C6.2 [Caenorhabditis elegans] ref|NP_503246.1| C14C6.2 [Caenorhabditis elegans] 5.0E-59
blast AAB94260 Hypothetical protein C14C6.2 [Caenorhabditis elegans] ref|NP_503246.1| C14C6.2 [Caenorhabditis elegans] 1.0E-56
blast CAE65497 Hypothetical protein CBG10467 [Caenorhabditis briggsae] 3.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.0E-12
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.3E-11
Pfam IPR007026 EMBL-EBI CC domain 3.6E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.4E-10
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.013
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.2E-7
Sequence
Target Sequence 
>C. ELEGANS:183527_S_AT
ggaggatgctgcccagacaatgatgtttacatcatctctgacacaactacgacaatggca
ccaaccactccatcacccggatcatgttgtgataagatcaacccaaaaactggtgtcagt
gactgcccaggaatgaagaactactgtaactatggtccatatattgatattatgaaggat
cagtgtccaaagacctgcggatactgtggctccggctcggcgacaactccaggaatctgc
agagacaagttgaatccgaccactggagtcagtgactgcccggctagacgaaatttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGATGCTGCCCAGACAATGATG 44 517 151 Antisense
CATCATCTCTGACACAACTACGACA 415 213 180 Antisense
AACTACGACAATGGCACCAACCACT 678 139 195 Antisense
CTCCATCACCCGGATCATGTTGTGA 443 235 218 Antisense
GAACTACTGTAACTATGGTCCATAT 693 347 288 Antisense
GGATCAGTGTCCAAAGACCTGCGGA 286 511 327 Antisense
AAAGACCTGCGGATACTGTGGCTCC 146 123 339 Antisense
CTCGGCGACAACTCCAGGAATCTGC 174 233 366 Antisense
GAGACAAGTTGAATCCGACCACTGG 422 393 392 Antisense
ACCACTGGAGTCAGTGACTGCCCGG 430 83 409 Antisense
GACTGCCCGGCTAGACGAAATTTGT 362 375 424 Antisense
Sequence Source Affymetrix Proprietary Database