[Home] | [Total List]

[183526_at]

Description C14C6.5 /REP_DB=WormBase Gene ID /WP=CE08160 /TR=O44667 /GB=AAB94263.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      6grp_highest_nonorm > 48      6grp_total > 98      4grp_total > 51      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12046
1 2 3 4 range
A 7907.9
(0.9)
P 		12062.3
(3)
P 		8977.1
(1.5)
P 		25
(-3)
A 		12037
B 7955.6
(1.6)
P 		10260.3
(3)
P 		8485.4
(2)
P 		27.4
(-3)
A 		10233
C 8558.1
(1.7)
P 		10959.2
(3)
P 		8033.7
(1.4)
P 		16.4
(-3)
A 		10943
avr 8140.5
(1.4) 		11093.9
(3) 		8498.7
(1.6) 		22.9
(-3) 		11071

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1757
1 2 3 4 5 6 range
A 3063.2
(-2.5)
P 		3329.8
(-1.2)
P 		2973.3
(-3)
P 		3394.6
(-0.8)
P 		3796.7
(1.2)
P 		4144.6
(3)
P 		1171
B 2878.5
(-2.9)
P 		2861.7
(-3)
P 		3108.9
(-1.8)
P 		3375.2
(-0.5)
P 		4036.9
(2.7)
P 		4101.3
(3)
P 		1240
C 3290.9
(-0.7)
P 		2632
(-3)
P 		2860.4
(-2.2)
P 		3177.8
(-1.1)
P 		4388.7
(3)
P 		4097.1
(2)
P 		1757
avr 3077.5
(-2.3) 		2941.2
(-3) 		2980.9
(-2.8) 		3315.9
(-1.1) 		4074.1
(2.8) 		4114.3
(3) 		1173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3148
1 2 3 4 range
A 2879.3
(3)
P 		2618.4
(2.5)
P 		2346.8
(1.9)
P 		3.7
(-3)
A 		2876
B 2537
(3)
P 		2534.1
(3)
P 		1966.3
(1.6)
P 		5.8
(-3)
A 		2531
C 2833
(2.4)
P 		3150.8
(3)
P 		2800
(2.3)
P 		2.8
(-3)
A 		3148
avr 2749.8
(3) 		2767.8
(3) 		2371
(2.1) 		4.1
(-3) 		2764

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1075
1 2 3 4 5 6 range
A 564.7
(-3)
P 		1184.2
(3)
P 		647.5
(-2.2)
P 		860.9
(-0.1)
P 		1145.7
(2.6)
P 		1009.1
(1.3)
P 		620
B 1001.6
(-1.3)
P 		952.5
(-1.7)
P 		754.9
(-3)
P 		894
(-2.1)
P 		1640.1
(3)
P 		1529.4
(2.2)
P 		885
C 1219.8
(1.5)
P 		803.1
(-1.7)
P 		728
(-2.3)
P 		639.1
(-3)
P 		1420.1
(3)
P 		1371.5
(2.6)
P 		781
avr 928.7
(-1.1) 		979.9
(-0.7) 		710.1
(-3) 		798
(-2.2) 		1402
(3) 		1303.3
(2.1) 		692
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183526_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15665
Sequence Type Exemplar sequence
Representative Public ID C14C6.5 NCBI
Target Description C14C6.5 /REP_DB=WormBase Gene ID /WP=CE08160 /TR=O44667 /GB=AAB94263.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070837(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070837 NCBI Caenorhabditis elegans C14C6.5 (C14C6.5) mRNA, complete cds. 11/11 A 
SNAP00000017691 ENSEMBL cdna:SNAP chromosome:CEL140:V:536476:537204:1 10/11 None
GENEFINDER00000017705 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:536476:541262:1 10/11 None
C14C6.5 ENSEMBL cdna:known chromosome:CEL140:V:536476:537315:1 gene:C14C6.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:536475-537315(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14C6.5
Entrez Gene 178574 Entrez gene
SwissProt O44667 EMBL-EBI
WormBase CE08160 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94262 Hypothetical protein C14C6.4 [Caenorhabditis elegans] ref|NP_503239.1| C14C6.4 [Caenorhabditis elegans] 1.0E-161
blast AAB69951 Hypothetical protein ZK488.4 [Caenorhabditis elegans] ref|NP_503258.1| ZK488.4 [Caenorhabditis elegans] 1.0E-119
blast AAB94263 Hypothetical protein C14C6.5 [Caenorhabditis elegans] ref|NP_503238.1| C14C6.5 [Caenorhabditis elegans] 1.0E-102
blast AAB94263 Hypothetical protein C14C6.5 [Caenorhabditis elegans] ref|NP_503238.1| C14C6.5 [Caenorhabditis elegans] 3.0E-91
blast AAB94263 Hypothetical protein C14C6.5 [Caenorhabditis elegans] ref|NP_503238.1| C14C6.5 [Caenorhabditis elegans] 5.0E-90
blast AAB94260 Hypothetical protein C14C6.2 [Caenorhabditis elegans] ref|NP_503246.1| C14C6.2 [Caenorhabditis elegans] 5.0E-59
blast AAB94260 Hypothetical protein C14C6.2 [Caenorhabditis elegans] ref|NP_503246.1| C14C6.2 [Caenorhabditis elegans] 1.0E-56
blast CAE65497 Hypothetical protein CBG10467 [Caenorhabditis briggsae] 3.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.0E-12
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.3E-11
Pfam IPR007026 EMBL-EBI CC domain 3.6E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.4E-10
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.013
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.2E-7
Sequence
Target Sequence 
>C. ELEGANS:183526_AT
tcacatggtattgctgcctttcttctggttctagttagccaggcaagtgctgaaattaag
ctcggatgtaagtcagatcctatgccagatgctaacggcaaatgcccacctggcactact
atgattactgctggaggatgctgcccagacaatgatgtttacatcatctctgacacaact
acgacaatggcaccaaccactccatcacccggatcatgttgtgataagatcaacccaaaa
actggtgtcagtgactgcccaggaatgaagaactactgtaactatggtccatatattgat
attatgaaggatcagtgtccaaagacctgcggatactgtggctccggctcggcgacaact
ccaggaatctgcagagacaagttgaatccgaccactggagtcagtgactgcccggctaga
cgaaatttgtgcaataatggaatctaccacgatgtgatgaaagaccagtgccccaagaca
tgcgatttcaaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACATGGTATTGCTGCCTTTCTTC 177 629 19 Antisense
TGCCTTTCTTCTGGTTCTAGTTAGC 575 585 33 Antisense
GGTTCTAGTTAGCCAGGCAAGTGCT 467 507 45 Antisense
GGCAAGTGCTGAAATTAAGCTCGGA 260 535 60 Antisense
TAAGCTCGGATGTAAGTCAGATCCT 135 633 75 Antisense
GTCAGATCCTATGCCAGATGCTAAC 587 465 90 Antisense
GATGCTAACGGCAAATGCCCACCTG 203 413 106 Antisense
AAATGCCCACCTGGCACTACTATGA 418 117 118 Antisense
CCCACCTGGCACTACTATGATTACT 311 259 123 Antisense
ACTATGATTACTGCTGGAGGATGCT 695 101 136 Antisense
GCCCCAAGACATGCGATTTCAAACA 332 285 488 Antisense
Sequence Source Affymetrix Proprietary Database