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[183524_at]

Description F31F7.2 /REP_DB=WormBase Gene ID /WP=CE09840 /TR=O01545 /GB=AAB52325.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 58.6
(-0.2)
P 		44.9
(-1.4)
A 		27.9
(-3)
A 		92.9
(3)
M 		65
B 67.1
(3)
P 		35.9
(-1.8)
A 		27.8
(-3)
A 		35.2
(-1.9)
A 		39
C 51.1
(-0.2)
A 		33.8
(-2.5)
A 		29.7
(-3)
A 		75.6
(3)
P 		46
avr 58.9
(1.6) 		38.2
(-1.5) 		28.5
(-3) 		67.9
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 64.6
(3)
A 		37.4
(0.4)
P 		2.2
(-3)
A 		14.7
(-1.8)
A 		54.6
(2)
P 		5
(-2.7)
A 		62
B 26
(-1.7)
A 		49.6
(3)
P 		23.4
(-2.2)
A 		19.4
(-3)
A 		26.7
(-1.5)
A 		29.6
(-1)
A 		30
C 54.2
(3)
A 		38.2
(0.9)
A 		37.3
(0.8)
P 		17.3
(-1.8)
A 		31.3
(0)
A 		8
(-3)
A 		46
avr 48.3
(3) 		41.7
(1.8) 		21
(-1.8) 		17.1
(-2.5) 		37.5
(1.1) 		14.2
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 21.4
(3)
P 		9.7
(-2)
A 		7.3
(-3)
A 		13.6
(-0.3)
M 		14
B 21.4
(3)
P 		8.9
(-2)
A 		6.5
(-3)
A 		7.5
(-2.6)
A 		15
C 16.9
(3)
A 		9.7
(-3)
A 		10.3
(-2.5)
A 		12.7
(-0.5)
P 		7
avr 19.9
(3) 		9.4
(-2.3) 		8
(-3) 		11.3
(-1.3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 11.9
(1.3)
A 		13.3
(1.8)
P 		0.5
(-3)
A 		3.7
(-1.8)
A 		16.5
(3)
P 		1.2
(-2.7)
A 		16
B 9
(-1)
A 		16.5
(3)
P 		5.7
(-2.7)
A 		5.2
(-3)
A 		10.8
(-0)
A 		11
(0.1)
A 		11
C 20.1
(3)
A 		11.7
(0.1)
A 		9.5
(-0.7)
P 		3.5
(-2.7)
A 		10.1
(-0.4)
A 		2.7
(-3)
A 		17
avr 13.7
(2.9) 		13.8
(3) 		5.2
(-2.3) 		4.1
(-3) 		12.5
(2.2) 		5
(-2.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183524_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11933
Sequence Type Exemplar sequence
Representative Public ID F31F7.2 NCBI
Target Description F31F7.2 /REP_DB=WormBase Gene ID /WP=CE09840 /TR=O01545 /GB=AAB52325.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072201(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072201 NCBI Caenorhabditis elegans F31F7.2 (F31F7.2) mRNA, complete cds. 9/11 A 
SNAP00000004370 ENSEMBL cdna:SNAP chromosome:CEL140:V:6273715:6277441:1 9/11 None
F31F7.2 ENSEMBL cdna:known chromosome:CEL140:V:6273529:6277505:1 gene:F31F7.2 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6273528-6277632(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31F7.2
Entrez Gene 179015 Entrez gene
SwissProt O01545 EMBL-EBI
WormBase CE29303 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52325 Hypothetical protein F31F7.2 [Caenorhabditis elegans] ref|NP_504602.1| F31F7.2 [Caenorhabditis elegans] 0.0
blast CAE71855 Hypothetical protein CBG18899 [Caenorhabditis briggsae] 0.0
blast XP_425157 PREDICTED: similar to type VII collagen [Gallus gallus] 6.0E-14
blast XP_425157 PREDICTED: similar to type VII collagen [Gallus gallus] 7.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 6.1E-31
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 6.1E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504602.1 2 67-89,277-299
F31F7.2 2 67-89,277-299
SNAP00000004370 2 5-27,215-237
Sequence
Target Sequence 
>C. ELEGANS:183524_AT
atattctcaagatccgagtgtcgtattcggcttcgatcaatactattcgtatgaaagtgt
tcgtcgaggcgtgatgagactttcctataccggaggagcaacaatgctatcgaaggcgtt
ggcttttgcgggtggaataatgtatcatgagcagaacttgaagaagaccacgaaaaagca
tcagtacttaccaactcccaaacatgacagacttcagatagtaaattttgaaagtgttca
aacaactaatgccaaaatgtcaataaaactacatgtgctctgcctcgtttcggacggcta
ttcggatgataatgctgataaagaaagtgtgaatcttcatgatcatcttcatgtaaagat
cttcgcagtggtaaccagatcattcaataaagacaagctggcaccaatcacgaggttcga
cggaagtgtgttcaccgtgcaccagagagaaagtgttgcaatttggctgtggaggcagca
aagaatatgggccgaacattatagcgctttcattgaaaaagaaaagaaaagaggtacaaa
gctaacgtttattttttcgcaaatcttccacacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTCTCAAGATCCGAGTGTCGTA 303 19 1320 Antisense
GAGTGTCGTATTCGGCTTCGATCAA 283 401 1335 Antisense
GAAAGTGTTCGTCGAGGCGTGATGA 334 359 1372 Antisense
GGCGTGATGAGACTTTCCTATACCG 415 541 1387 Antisense
GACTTTCCTATACCGGAGGAGCAAC 53 369 1397 Antisense
GAGCAACAATGCTATCGAAGGCGTT 685 389 1415 Antisense
GCGTTGGCTTTTGCGGGTGGAATAA 103 283 1435 Antisense
TACTTACCAACTCCCAAACATGACA 440 645 1504 Antisense
CAACTCCCAAACATGACAGACTTCA 529 187 1511 Antisense
TAAAACTACATGTGCTCTGCCTCGT 193 641 1583 Antisense
TTTTTTCGCAAATCTTCCACACAAT 519 675 1871 Antisense
Sequence Source Affymetrix Proprietary Database