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[183523_at]

Description K12B6.6 /REP_DB=WormBase Gene ID /WP=CE12174 /TR=O16384 /GB=AAB65914.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 14.7
(-2.7)
A 		39.2
(3)
A 		13.6
(-3)
A 		29.8
(0.8)
A 		26
B 8.3
(-2.8)
A 		85.1
(3)
A 		14.3
(-2.3)
A 		5.3
(-3)
A 		80
C 38.6
(0.2)
A 		45.2
(0.9)
A 		6.6
(-3)
A 		66.5
(3)
A 		60
avr 20.5
(-1.8) 		56.5
(3) 		11.5
(-3) 		33.9
(-0) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 9.6
(2.7)
A 		5
(-1.4)
A 		9.1
(2.3)
A 		9.9
(3)
A 		7.6
(0.9)
A 		3.2
(-3)
A 		7
B 4.5
(-2.5)
A 		7.8
(-1)
A 		3.3
(-3)
A 		6.5
(-1.6)
A 		16.8
(3)
A 		4.6
(-2.4)
A 		14
C 5.3
(-2.8)
A 		22.6
(-1.2)
A 		43.7
(0.8)
A 		3.2
(-3)
A 		67.5
(3)
A 		4
(-2.9)
A 		64
avr 6.5
(-2.4) 		11.8
(-1.2) 		18.7
(0.3) 		6.5
(-2.4) 		30.6
(3) 		3.9
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 5.4
(-0.8)
A 		8.5
(3)
A 		3.6
(-3)
A 		4.4
(-2)
A 		5
B 2.6
(-2.5)
A 		21
(3)
A 		3.3
(-2.3)
A 		1.1
(-3)
A 		20
C 12.8
(2.9)
A 		13
(3)
A 		2.3
(-3)
A 		11.2
(2)
A 		11
avr 6.9
(-0.9) 		14.2
(3) 		3.1
(-3) 		5.6
(-1.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.8
(0.5)
A 		1.8
(0.5)
A 		2
(1.2)
A 		2.5
(3)
A 		2.3
(2.3)
A 		0.8
(-3)
A 		2
B 1.6
(-2.2)
A 		2.6
(-1.2)
A 		0.8
(-3)
A 		1.7
(-2.1)
A 		6.8
(3)
A 		1.7
(-2.1)
A 		6
C 2
(-2.6)
A 		6.9
(-1.2)
A 		11.1
(-0)
A 		0.6
(-3)
A 		21.8
(3)
A 		1.3
(-2.8)
A 		21
avr 1.8
(-2.7) 		3.8
(-1.3) 		4.6
(-0.8) 		1.6
(-2.8) 		10.3
(3) 		1.3
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183523_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11643
Sequence Type Exemplar sequence
Representative Public ID K12B6.6 NCBI
Target Description K12B6.6 /REP_DB=WormBase Gene ID /WP=CE12174 /TR=O16384 /GB=AAB65914.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072207(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072207 NCBI Caenorhabditis elegans K12B6.6 (K12B6.6) mRNA, complete cds. 11/11 None
K12B6.6 ENSEMBL cdna:known chromosome:CEL140:V:6296514:6296936:-1 gene:K12B6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6296513-6296936(-) 94.21 100.0
Public Domain and Genome References
Gene Title
Ensembl K12B6.6
Entrez Gene 187318 Entrez gene
SwissProt O16384 EMBL-EBI
WormBase CE12174 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65914 Hypothetical protein K12B6.6 [Caenorhabditis elegans] ref|NP_504608.1| K12B6.6 [Caenorhabditis elegans] 4.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504608.1 1 78-100
K12B6.6 1 78-100
Sequence
Target Sequence 
>C. ELEGANS:183523_AT
gagaaaactatttccgggcgagtatttgttagtgtccagagcagggatcacctgattagc
caattttcacgagaattttttgaaatcgtgatcaagaaaattggcctacaaaataccact
caccaggagaacttcccaccaaggaagagcgtactttatgatattcaaataaatataaat
ttaattagaggctcaaaaatggtgtcaaagagttttcagttcagattacacttcctccgt
gttaatctcgtttgcgctgtaacatttgttacggatattcattacgcaataaatcaaatt
ctgagagaacacatgattcagtacact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAAACTATTTCCGGGCGAGTAT 133 389 19 Antisense
CGGGCGAGTATTTGTTAGTGTCCAG 487 243 33 Antisense
TAGTGTCCAGAGCAGGGATCACCTG 658 653 48 Antisense
GGATCACCTGATTAGCCAATTTTCA 513 511 63 Antisense
ATTGGCCTACAAAATACCACTCACC 682 1 118 Antisense
TACCACTCACCAGGAGAACTTCCCA 80 651 132 Antisense
TCCCACCAAGGAAGAGCGTACTTTA 542 583 152 Antisense
TTCAGTTCAGATTACACTTCCTCCG 137 689 233 Antisense
TACACTTCCTCCGTGTTAATCTCGT 406 643 245 Antisense
TAATCTCGTTTGCGCTGTAACATTT 594 633 261 Antisense
GAGAGAACACATGATTCAGTACACT 215 395 321 Antisense
Sequence Source Affymetrix Proprietary Database