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[183522_at]

Description Y69H2.13 /REP_DB=WormBase Gene ID /WP=CE22831 /TR=Q9U1T7 /GB=CAB63410.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 47      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 94.7
(1.3)
A 		82.6
(-0.5)
A 		65.2
(-3)
A 		106.7
(3)
A 		42
B 101.1
(3)
A 		29.7
(-3)
A 		68.1
(0.2)
A 		37.1
(-2.4)
A 		71
C 85.3
(3)
A 		83
(2.6)
A 		63.8
(-1.1)
A 		53.5
(-3)
A 		32
avr 93.7
(3) 		65.1
(-3) 		65.7
(-2.9) 		65.8
(-2.9) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 82
(3)
A 		29.5
(-1.2)
A 		39.3
(-0.4)
A 		6.9
(-3)
A 		24.6
(-1.6)
A 		28.3
(-1.3)
A 		75
B 77.2
(2.6)
A 		50.2
(0.4)
A 		28.4
(-1.4)
A 		36.7
(-0.7)
A 		81.8
(3)
A 		9.4
(-3)
A 		72
C 68.7
(3)
A 		27.6
(-2.7)
A 		47.3
(0)
A 		25.7
(-3)
A 		30
(-2.4)
A 		42.6
(-0.6)
A 		43
avr 76
(3) 		35.8
(-1.6) 		38.3
(-1.3) 		23.1
(-3) 		45.5
(-0.5) 		26.8
(-2.6) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 34.5
(3)
A 		17.9
(-2.3)
A 		17.1
(-2.5)
A 		15.6
(-3)
A 		19
B 32.2
(3)
A 		7.3
(-3)
A 		15.8
(-1)
A 		7.9
(-2.9)
A 		25
C 28.2
(3)
A 		23.9
(1.7)
A 		22.2
(1.1)
A 		9
(-3)
A 		19
avr 31.6
(3) 		16.4
(-1.4) 		18.4
(-0.8) 		10.8
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 15.1
(3)
A 		10.5
(0.9)
A 		8.6
(0.1)
A 		1.8
(-3)
A 		7.4
(-0.5)
A 		6.9
(-0.7)
A 		13
B 26.9
(1.7)
A 		16.7
(-0.3)
A 		6.9
(-2.3)
A 		9.7
(-1.8)
A 		33.3
(3)
A 		3.5
(-3)
A 		30
C 25.5
(3)
A 		8.4
(-2.1)
A 		12
(-1)
A 		5.2
(-3)
A 		9.7
(-1.7)
A 		14.3
(-0.3)
A 		20
avr 22.5
(3) 		11.9
(-0.8) 		9.2
(-1.7) 		5.6
(-3) 		16.8
(1) 		8.2
(-2.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183522_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14531
Sequence Type Exemplar sequence
Representative Public ID Y69H2.13 NCBI
Target Description Y69H2.13 /REP_DB=WormBase Gene ID /WP=CE22831 /TR=Q9U1T7 /GB=CAB63410.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075240(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075240 NCBI Caenorhabditis elegans Y69H2.13 (Y69H2.13) mRNA, complete cds. 11/11 None
SNAP00000002596 ENSEMBL cdna:SNAP chromosome:CEL140:V:18633167:18658739:1 11/11 None
GENEFINDER00000002613 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18643083:18658587:1 10/11 None
Y69H2.13 ENSEMBL cdna:known chromosome:CEL140:V:18657292:18658739:1 gene:Y69H2.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18657291-18658739(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69H2.13
Entrez Gene 190562 Entrez gene
SwissProt Q9U1T7 EMBL-EBI
WormBase CE37449 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6814 sodium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5272 sodium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63408 Hypothetical protein Y69H2.11 [Caenorhabditis elegans] ref|NP_507639.1| Y69H2.11 [Caenorhabditis elegans] 0.0
blast CAB11570 Hypothetical protein Y69H2.2 [Caenorhabditis elegans] ref|NP_507638.1| Y69H2.2 [Caenorhabditis elegans] 0.0
blast CAB63409 Hypothetical protein Y69H2.12 [Caenorhabditis elegans] ref|NP_507640.1| Y69H2.12 [Caenorhabditis elegans] 0.0
blast CAB63410 Hypothetical protein Y69H2.13 [Caenorhabditis elegans] ref|NP_507641.2| Y69H2.13 [Caenorhabditis elegans] 1.0E-151
blast CAB11570 Hypothetical protein Y69H2.2 [Caenorhabditis elegans] ref|NP_507638.1| Y69H2.2 [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 3.1E-35
Pfam IPR006209 EMBL-EBI EGF-like domain 6.3E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 6.6E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.6E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 7.3E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 2.6E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.5E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 3.4E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 1.5E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.4E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 4.3E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 2.5E-4
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 1.8E-40
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 9.7E-39
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 2.1E-4
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 2.6E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 6.6E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.6E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 7.3E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 2.6E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.5E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 1.5E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.4E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 4.3E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 2.5E-4
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 2.3E-37
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 2.1E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507641.2 1 226-248
Y69H2.13 1 226-248
SNAP00000002596 1 2132-2154
Sequence
Target Sequence 
>C. ELEGANS:183522_AT
cgtgctaccaggaccgtatgcaacaggagtgccagtgcatggacccccgctaccccaaag
cccccaacgctacgtcatgccagttatccgaacgaagttgtgtcaccgaagcatccgacg
ccgcaggggacccatccacctggtcatcttgtgtatgcccgctgccatgctccaatcagg
agtactcggtgacttggagcaaggcgaattttgtgaatatgcctataacctgcgagaagt
cttctgacgtggcaacctgccaagccaactatgtggaccagcttatggtatccattgttc
tgcctaagctggattttcagatctacgcggagacccctgctatggatttcaacaagttcc
tgtcccaactcggaggtcagctgggtgtactaatgggaattaacctggtcacgtttattg
aagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGCTACCAGGACCGTATGCAACA 109 245 356 Antisense
AACAGGAGTGCCAGTGCATGGACCC 294 135 377 Antisense
ATGCCAGTTATCCGAACGAAGTTGT 132 41 432 Antisense
GAAGTTGTGTCACCGAAGCATCCGA 491 337 449 Antisense
CGCTGCCATGCTCCAATCAGGAGTA 43 255 515 Antisense
GCCTATAACCTGCGAGAAGTCTTCT 544 281 576 Antisense
TTCTGACGTGGCAACCTGCCAAGCC 49 695 597 Antisense
GCCAAGCCAACTATGTGGACCAGCT 506 277 614 Antisense
TATGGTATCCATTGTTCTGCCTAAG 445 655 639 Antisense
TTGTTCTGCCTAAGCTGGATTTTCA 569 705 650 Antisense
TAACCTGGTCACGTTTATTGAAGTT 519 637 756 Antisense
Sequence Source Affymetrix Proprietary Database