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[183521_at]

Description F07C6.4B /REP_DB=WormBase Gene ID /WP=CE18569 /TR=P90929 /GB=CAB03204.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 17      6grp_total > 06      4grp_total > 45      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 610.2
(3)
P 		412.3
(-1.8)
A 		387.5
(-2.4)
M 		360.7
(-3)
P 		250
B 638.1
(3)
P 		492.5
(0.7)
M 		363.3
(-1.4)
A 		260.4
(-3)
P 		378
C 609.4
(3)
P 		498.1
(0.5)
A 		345.2
(-3)
P 		366
(-2.5)
P 		264
avr 619.2
(3) 		467.6
(-0.1) 		365.3
(-2.2) 		329
(-3) 		290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 819
1 2 3 4 5 6 range
A 1124.5
(3)
P 		565
(-1.3)
P 		386.4
(-2.6)
P 		336.1
(-3)
A 		384.2
(-2.6)
P 		385.3
(-2.6)
P 		788
B 811
(3)
P 		601.7
(-0.1)
P 		446.5
(-2.3)
P 		425.8
(-2.6)
P 		412.2
(-2.8)
P 		400.3
(-3)
P 		411
C 896.8
(3)
P 		571.5
(-0.3)
P 		416.3
(-1.9)
M 		337.1
(-2.7)
A 		396.8
(-2.1)
P 		305.3
(-3)
P 		592
avr 944.1
(3) 		579.4
(-0.8) 		416.4
(-2.5) 		366.3
(-3) 		397.7
(-2.6) 		363.6
(-3) 		581
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 222.2
(3)
P 		89.5
(-1.7)
A 		101.3
(-1.3)
M 		52.8
(-3)
P 		169
B 203.5
(3)
P 		121.6
(-0.3)
M 		84.2
(-1.8)
A 		55.5
(-3)
P 		148
C 201.7
(3)
P 		143.2
(0.5)
A 		120.3
(-0.5)
P 		61.7
(-3)
P 		140
avr 209.1
(3) 		118.1
(-0.6) 		101.9
(-1.2) 		56.7
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 207.3
(3)
P 		201
(2.7)
P 		84.1
(-3)
P 		85.2
(-2.9)
A 		115.9
(-1.5)
P 		93.8
(-2.5)
P 		123
B 282.2
(3)
P 		200.3
(0.2)
P 		108.4
(-3)
P 		112.8
(-2.8)
P 		167.5
(-1)
P 		149.3
(-1.6)
P 		174
C 332.4
(3)
P 		174.4
(-0.6)
P 		105.9
(-2.1)
M 		67.8
(-3)
A 		128.4
(-1.6)
P 		102.2
(-2.2)
P 		265
avr 274
(3) 		191.9
(0.3) 		99.5
(-2.6) 		88.6
(-3) 		137.3
(-1.4) 		115.1
(-2.1) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183521_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9856
Sequence Type Exemplar sequence
Representative Public ID F07C6.4B NCBI
Target Description F07C6.4B /REP_DB=WormBase Gene ID /WP=CE18569 /TR=P90929 /GB=CAB03204.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070041(9), NM_070042(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070041 NCBI Caenorhabditis elegans F07C6.4b (F07C6.4) mRNA, complete cds. 9/11 A 
NM_070042 NCBI Caenorhabditis elegans F07C6.4c (F07C6.4) mRNA, complete cds. 9/11 None
SNAP00000031732 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12823630:12829579:1 9/11 None
GENEFINDER00000031742 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12825371:12829579:1 9/11 None
F07C6.4b.1 ENSEMBL cdna:known chromosome:CEL140:IV:12817031:12830191:1 gene:F07C6.4 9/11 None
F07C6.4b.2 ENSEMBL cdna:known chromosome:CEL140:IV:12817339:12830070:1 gene:F07C6.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178235 3 2 NM_070041 174436_at (10), 183521_at (9)
NM_070042 183521_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12817344-12829585(+) 100.0 100.0
Public Domain and Genome References
Ensembl F07C6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03204 Hypothetical protein F07C6.4b [Caenorhabditis elegans] emb|CAA93486.2| Hypothetical protein F07C6.4b [Caenorhabditis elegans] ref|NP_502442.2| F07C6.4b [Caenorhabditis elegans] 0.0
blast CAB03207 Hypothetical protein F07C6.4c [Caenorhabditis elegans] emb|CAA93488.2| Hypothetical protein F07C6.4c [Caenorhabditis elegans] ref|NP_502443.2| F07C6.4c [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183521_AT
tgtcaagctggatttgccactgcaagcttggatcgtcgatattcgaaacttaatggagga
agattatcatcaggtggtggtggatcggatgatgttgttcgacagaatgttactactaga
atcacaacattccctgtcgctacgtcagcggctaccaaaaaaggaattatttcggttttt
cgagaattttttaaagaattttcgaagaaaacaaattcgattttcgaaaaaaatgttgtc
ggattttcaaaaattaaaaaaaatccgtttgttctgaaaaaaagtcaattttccatattt
gaggacttttttatttttcttcctgaaaagattcttattggaaaaaatacgggaaaacct
tactctgcatcagaacttcctcgatttcaaccacctcctccagttgcccgtgtcacacat
atgccacgtggatccctgccaccgtactcctccgcgacaatgggagcacaatcaccggct
cctccgccaaacggaaaattgccgacaaatccgcaaatggaggcacttttatcatattat
aagcagcaacagcaacaacaacatcagcagcaatcacggtcagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCAAGCTGGATTTGCCACTGCAA 492 557 1495 Antisense
GCCACTGCAAGCTTGGATCGTCGAT 360 275 1510 Antisense
TAGAATCACAACATTCCCTGTCGCT 166 653 1611 Antisense
TCGCTACGTCAGCGGCTACCAAAAA 518 597 1631 Antisense
ATACGGGAAAACCTTACTCTGCATC 325 21 1841 Antisense
TTACTCTGCATCAGAACTTCCTCGA 319 681 1854 Antisense
GTCACACATATGCCACGTGGATCCC 426 463 1906 Antisense
GTACTCCTCCGCGACAATGGGAGCA 437 459 1938 Antisense
GGCTCCTCCGCCAAACGGAAAATTG 5 541 1971 Antisense
ATCCGCAAATGGAGGCACTTTTATC 4 19 2003 Antisense
ACATCAGCAGCAATCACGGTCAGCG 577 103 2055 Antisense
Sequence Source Affymetrix Proprietary Database