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[183517_at]

Description F58F9.6 /REP_DB=WormBase Gene ID /WP=CE07303 /TR=Q20991 /GB=AAC48082.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.4
(0)
A 		2
(-3)
A 		2.8
(3)
A 		2.2
(-1.5)
A 		1
B 5.3
(2.9)
A 		5.4
(3)
A 		1.9
(-2.3)
A 		1.4
(-3)
A 		4
C 1.4
(-2.9)
A 		2.2
(-2)
A 		1.3
(-3)
A 		6.5
(3)
A 		5
avr 3
(1.3) 		3.2
(2.1) 		2
(-3) 		3.4
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 2.2
(-2.7)
A 		2.3
(-2.7)
A 		1.3
(-3)
A 		1.7
(-2.9)
A 		18.7
(3)
A 		8.8
(-0.4)
A 		17
B 3
(-2.6)
A 		1.7
(-2.8)
A 		1.1
(-3)
A 		29.2
(3)
A 		1.6
(-2.9)
A 		0.9
(-3)
A 		28
C 3
(0.1)
A 		2
(-1.7)
A 		3.6
(1.2)
A 		4.6
(3)
A 		4.3
(2.5)
A 		1.3
(-3)
A 		3
avr 2.7
(-2.6) 		2
(-3) 		2
(-3) 		11.8
(3) 		8.2
(0.8) 		3.7
(-2) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.9
(3)
A 		0.4
(-2)
A 		0.7
(1)
A 		0.3
(-3)
A 		1
B 1.7
(3)
A 		1.3
(1.3)
A 		0.4
(-2.6)
A 		0.3
(-3)
A 		1
C 0.5
(-2.1)
A 		0.6
(-1.3)
A 		0.4
(-3)
A 		1.1
(3)
A 		1
avr 1
(3) 		0.8
(0.6) 		0.5
(-3) 		0.6
(-1.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.4
(-2.9)
A 		0.8
(-2.4)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		5.6
(3)
A 		2.1
(-1)
A 		5
B 1
(-2.4)
A 		0.6
(-2.8)
A 		0.3
(-3)
A 		7.7
(3)
A 		0.6
(-2.8)
A 		0.3
(-3)
A 		7
C 1.1
(1.2)
A 		0.6
(-1.8)
A 		0.9
(0)
A 		0.9
(0)
A 		1.4
(3)
A 		0.4
(-3)
A 		1
avr 0.8
(-2.3) 		0.7
(-2.5) 		0.5
(-3) 		3
(3) 		2.5
(1.8) 		0.9
(-2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183517_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10696
Sequence Type Exemplar sequence
Representative Public ID F58F9.6 NCBI
Target Description F58F9.6 /REP_DB=WormBase Gene ID /WP=CE07303 /TR=Q20991 /GB=AAC48082.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068541(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068541 NCBI Caenorhabditis elegans F58F9.6 (F58F9.6) mRNA, complete cds. 11/11 None
SNAP00000041826 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6235961:6236527:-1 10/11 None
GENEFINDER00000041837 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6235961:6237527:-1 11/11 None
F58F9.6 ENSEMBL cdna:known chromosome:CEL140:IV:6235961:6237527:-1 gene:F58F9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6235966-6237533(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58F9.6
Entrez Gene 186537 Entrez gene
SwissProt Q20991 EMBL-EBI
WormBase CE07303 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48082 Hypothetical protein F58F9.6 [Caenorhabditis elegans] ref|NP_500942.1| F58F9.6 [Caenorhabditis elegans] 1.0E-178
blast AAC48082 Hypothetical protein F58F9.6 [Caenorhabditis elegans] ref|NP_500942.1| F58F9.6 [Caenorhabditis elegans] 1.0E-112
blast AAY44006 Hypothetical protein F58F9.8 [Caenorhabditis elegans] ref|NP_001023243.1| F58F9.8 [Caenorhabditis elegans] 3.0E-77
blast AAY44007 Hypothetical protein F58F9.9 [Caenorhabditis elegans] ref|NP_001023244.1| F58F9.9 [Caenorhabditis elegans] 3.0E-76
Sequence
Target Sequence 
>C. ELEGANS:183517_AT
ctccccgcttcagctagaagaccatgttgtaaaccatatacaccattaaaaattaaaaaa
acaatgcaatgtggaccattaccagaggaagatacagatacatcaaaaccttgttgtccg
aaaggaggattatggtcatcttggagtggatatataagaaactatgcaagcaatggatgg
gaaagaactcgatcatgtttgtctggaacagcaggttgccaatgtaccggttcaacagtt
gaaacttcaaataagtgcccttgtagagcaatgattgatgtatctgacaaagtcaaaaga
aatttgaaaacattcccactttctgttgactacgatggcaattcctgcactgcacgtcaa
aacttagagtatttcaataatgttcccacacagattgttccatgcaacgcctggaagaat
tatttgtacacagctgctatcagatatgtcactccaaatgataagattgtggaacagcga
gtcgcaaattgtttggcattgggacagaaacaagtatcattattctgcgacttgaactca
ggctactgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCCGCTTCAGCTAGAAGACCAT 106 235 259 Antisense
GATACATCAAAACCTTGTTGTCCGA 221 423 355 Antisense
GAACTCGATCATGTTTGTCTGGAAC 569 349 443 Antisense
AGCAGGTTGCCAATGTACCGGTTCA 129 77 468 Antisense
TTCCCACTTTCTGTTGACTACGATG 284 697 571 Antisense
TACGATGGCAATTCCTGCACTGCAC 394 647 589 Antisense
CCTGCACTGCACGTCAAAACTTAGA 262 267 602 Antisense
AATGTTCCCACACAGATTGTTCCAT 10 163 637 Antisense
ACAGATTGTTCCATGCAACGCCTGG 645 107 648 Antisense
GCTGCTATCAGATATGTCACTCCAA 260 297 691 Antisense
TGCGACTTGAACTCAGGCTACTGGA 260 575 784 Antisense
Sequence Source Affymetrix Proprietary Database