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[183516_at]

Description F40G9.2 /REP_DB=WormBase Gene ID /WP=CE19849 /TR=Q9TZ68 /GB=AAC68797.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 31      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 62      6grp_total > 43      4grp_total > 50      6grp_high1_sub > 03      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 533
1 2 3 4 range
A 396.1
(-2.6)
P 		652.4
(2.5)
P 		675.6
(3)
P 		376.9
(-3)
P 		299
B 435
(-1.9)
P 		628.3
(1.4)
P 		724.8
(3)
P 		367.6
(-3)
P 		357
C 465.1
(-2.1)
P 		900.6
(3)
P 		589.1
(-0.7)
P 		391
(-3)
P 		510
avr 432.1
(-2.1) 		727.1
(3) 		663.2
(1.9) 		378.5
(-3) 		349

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 534
1 2 3 4 5 6 range
A 542.8
(-0.2)
P 		439.3
(-1.9)
P 		740.2
(3)
P 		421.3
(-2.2)
P 		399
(-2.5)
P 		371.2
(-3)
P 		369
B 486.9
(-1.3)
P 		582.7
(-0.2)
P 		868.3
(3)
P 		405.2
(-2.2)
P 		386.3
(-2.4)
P 		334.4
(-3)
P 		534
C 544.4
(3)
P 		538.1
(2.8)
P 		402.3
(-2.6)
P 		505.8
(1.5)
P 		391.2
(-3)
P 		402
(-2.6)
P 		153
avr 524.7
(0.1) 		520
(0) 		670.3
(3) 		444.1
(-1.5) 		392.2
(-2.5) 		369.2
(-3) 		301
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 144.2
(1.4)
P 		141.6
(1.3)
P 		176.6
(3)
P 		55.2
(-3)
P 		121
B 138.7
(1)
P 		155.2
(2.1)
P 		168
(3)
P 		78.3
(-3)
P 		90
C 154
(-0.3)
P 		258.9
(3)
P 		205.3
(1.3)
P 		65.9
(-3)
P 		193
avr 145.6
(1) 		185.2
(3) 		183.3
(2.9) 		66.5
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 100.1
(-2.2)
P 		156.2
(2.6)
P 		161.2
(3)
P 		106.8
(-1.6)
P 		120.4
(-0.5)
P 		90.4
(-3)
P 		71
B 169.4
(0.6)
P 		194
(2)
P 		210.8
(3)
P 		107.3
(-3)
P 		157
(-0.1)
P 		124.7
(-2)
P 		104
C 201.8
(3)
P 		164.2
(0.7)
P 		102.4
(-3)
P 		101.7
(-3)
P 		126.6
(-1.5)
P 		134.6
(-1)
P 		100
avr 157.1
(1.7) 		171.5
(3) 		158.1
(1.8) 		105.3
(-3) 		134.7
(-0.3) 		116.6
(-2) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183516_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8160
Sequence Type Exemplar sequence
Representative Public ID F40G9.2 NCBI
Target Description F40G9.2 /REP_DB=WormBase Gene ID /WP=CE19849 /TR=Q9TZ68 /GB=AAC68797.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064774(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064774 NCBI Caenorhabditis elegans F40G9.2 (F40G9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000021784 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:190996:191862:1 11/11 None
F40G9.2 ENSEMBL cdna:known chromosome:CEL140:III:190983:191980:1 gene:F40G9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:190995-191862(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40G9.2
Entrez Gene 175186 Entrez gene
SwissProt Q9TZ68 EMBL-EBI
WormBase CE19849 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6825 copper ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5758 mitochondrial intermembrane space inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5507 copper ion binding inferred from electronic annotation QuickGO AmiGO
16531 copper chaperone activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68797 Hypothetical protein F40G9.2 [Caenorhabditis elegans] ref|NP_497175.1| F40G9.2 [Caenorhabditis elegans] 6.0E-31
blast CAE69516 Hypothetical protein CBG15725 [Caenorhabditis briggsae] 2.0E-20
blast AAF48421 CG9065-PA [Drosophila melanogaster] ref|NP_572998.1| CG9065-PA [Drosophila melanogaster] 7.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR007745 EMBL-EBI Cytochrome C oxidase copper chaperone 1.5E-51
Sequence
Target Sequence 
>C. ELEGANS:183516_AT
ccagcagagccacaaaaatccacagaagccggcagcgtggcaccggagaagaagctgaaa
gcgtgctgcgcgtgtcctgaaacgaaacgagtccgtgacgcttgcatcatcgaaaacggc
gaggagaagtgcggaaaactgatcgaagcccataaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCAGAGCCACAAAAATCCACAG 297 273 16 Antisense
AAAAATCCACAGAAGCCGGCAGCGT 218 129 29 Antisense
TCCACAGAAGCCGGCAGCGTGGCAC 593 587 34 Antisense
GAAGCTGAAAGCGTGCTGCGCGTGT 571 343 66 Antisense
GCTGCGCGTGTCCTGAAACGAAACG 349 297 80 Antisense
AACGAAACGAGTCCGTGACGCTTGC 578 139 96 Antisense
TCCGTGACGCTTGCATCATCGAAAA 409 593 107 Antisense
GACGCTTGCATCATCGAAAACGGCG 646 379 112 Antisense
GAAAACGGCGAGGAGAAGTGCGGAA 347 355 127 Antisense
GGAGAAGTGCGGAAAACTGATCGAA 350 519 138 Antisense
AAAACTGATCGAAGCCCATAAAGCC 226 131 150 Antisense
Sequence Source Affymetrix Proprietary Database