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[183515_at]

Description C24G7.1 /REP_DB=WormBase Gene ID /WP=CE08351 /TR=P91103 /GB=AAB42337.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 4.6
(-3)
A 		20.5
(0.3)
A 		33.5
(3)
A 		12.6
(-1.3)
A 		29
B 8.9
(-1.8)
A 		20.9
(1.5)
A 		4.5
(-3)
A 		26.6
(3)
A 		22
C 17.9
(-1.6)
A 		39.3
(3)
A 		20.3
(-1.1)
A 		11.2
(-3)
A 		28
avr 10.5
(-3) 		26.9
(3) 		19.4
(0.3) 		16.8
(-0.7) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 37.4
(3)
A 		6.4
(-2.2)
A 		4.8
(-2.5)
A 		24
(0.7)
A 		21.1
(0.2)
A 		1.9
(-3)
A 		36
B 5.8
(-2)
A 		5.3
(-2.3)
A 		13.1
(3)
A 		7.5
(-0.8)
A 		4.3
(-3)
A 		9.3
(0.4)
A 		9
C 9.1
(-3)
A 		45
(3)
A 		16.6
(-1.7)
A 		33.9
(1.1)
A 		11.4
(-2.6)
A 		24.3
(-0.5)
A 		36
avr 17.4
(0.4) 		18.9
(1.3) 		11.5
(-3) 		21.8
(3) 		12.3
(-2.5) 		11.8
(-2.8) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.7
(-3)
A 		4.5
(-0.6)
A 		8.8
(3)
A 		1.8
(-2.9)
A 		7
B 2.8
(-0.7)
A 		5.2
(2.4)
A 		1
(-3)
A 		5.7
(3)
A 		5
C 5.9
(-0.4)
A 		11.3
(3)
A 		7.1
(0.3)
A 		1.9
(-3)
A 		9
avr 3.5
(-2.4) 		7
(3) 		5.6
(0.8) 		3.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 6.9
(3)
A 		2.3
(-1.3)
A 		1
(-2.5)
A 		6.1
(2.3)
A 		6.4
(2.5)
A 		0.5
(-3)
A 		6
B 2
(-2.3)
A 		1.8
(-3)
A 		3.2
(1.9)
A 		2
(-2.3)
A 		1.8
(-3)
A 		3.5
(3)
A 		2
C 3.4
(-3)
A 		13.7
(3)
A 		4.2
(-2.5)
A 		6.8
(-1)
A 		3.7
(-2.8)
A 		8.1
(-0.3)
A 		10
avr 4.1
(-0.5) 		5.9
(3) 		2.8
(-3) 		5
(1.3) 		4
(-0.7) 		4
(-0.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183515_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.922
Sequence Type Exemplar sequence
Representative Public ID C24G7.1 NCBI
Target Description C24G7.1 /REP_DB=WormBase Gene ID /WP=CE08351 /TR=P91103 /GB=AAB42337.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058895(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058895 NCBI Caenorhabditis elegans C24G7.1 (C24G7.1) mRNA, complete cds. 11/11 None
SNAP00000001461 ENSEMBL cdna:SNAP chromosome:CEL140:I:4109408:4112216:1 10/11 None
GENEFINDER00000001480 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4109408:4112386:1 11/11 None
C24G7.1 ENSEMBL cdna:known chromosome:CEL140:I:4109408:4112386:1 gene:C24G7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4109407-4112386(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24G7.1
Entrez Gene 182851 Entrez gene
SwissProt P91103 EMBL-EBI
WormBase CE08351 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6814 sodium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5272 sodium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42337 Hypothetical protein C24G7.1 [Caenorhabditis elegans] ref|NP_491296.1| C24G7.1 [Caenorhabditis elegans] 0.0
blast AAB42338 Hypothetical protein C24G7.2 [Caenorhabditis elegans] ref|NP_491295.2| C24G7.2 [Caenorhabditis elegans] 0.0
blast CAE66721 Hypothetical protein CBG12067 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 1.0E-126
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491296.1 2 87-109,505-527
C24G7.1 2 87-109,505-527
SNAP00000001461 2 87-109,519-541
GENEFINDER00000001480 2 87-109,505-527
Sequence
Target Sequence 
>C. ELEGANS:183515_AT
aatgggtctaacaacgcaacagggaaactggagttcaaacttccacgttgtgctcaatgt
gctcagcaatgcaataatctgatatatcgagcgttcaactcccagggtaaccagttttcg
gcgagagcctttgaatggtttcgcacaaataactcaaattggacaatggcacacatcaaa
accaacttccaaataatccacattttctaccaagatatgtcaaacacagagtataatcaa
gttcaagatgcatcaatttcagatcttttaagtaacattggaggaaatatgggaatgttc
ttgggaatgtcacttatcacaataaccgagatttgcctttatttctcgaaaatcatttgg
ttaggaatttcaaagaagcgacgggagtacatgtattcaaaacgggttcatgaaaagact
cataaaaaagaaattgtcgagacggttgagaagatgaaagttattgaatcgaaacgaaaa
ttatcatcacctatcggttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGGTCTAACAACGCAACAGGGA 529 161 1231 Antisense
GATATATCGAGCGTTCAACTCCCAG 117 427 1311 Antisense
GCGTTCAACTCCCAGGGTAACCAGT 690 279 1321 Antisense
GGTAACCAGTTTTCGGCGAGAGCCT 72 503 1336 Antisense
GAGAGCCTTTGAATGGTTTCGCACA 99 395 1353 Antisense
AAACCAACTTCCAAATAATCCACAT 514 125 1409 Antisense
GATGCATCAATTTCAGATCTTTTAA 381 413 1477 Antisense
GGGAATGTCACTTATCACAATAACC 50 495 1533 Antisense
ATAACCGAGATTTGCCTTTATTTCT 519 25 1552 Antisense
GAAGCGACGGGAGTACATGTATTCA 158 343 1605 Antisense
GAAAATTATCATCACCTATCGGTTT 592 353 1706 Antisense
Sequence Source Affymetrix Proprietary Database