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[183514_s_at]

Description F47G6.3 /REP_DB=WormBase Gene ID /WP=CE17840 /TR=Q9TZI8 /GB=AAK18954.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 13      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 24.3
(-0.8)
A 		21.7
(-1.2)
A 		8.2
(-3)
A 		52.2
(3)
A 		44
B 24.1
(-1.4)
A 		18.6
(-3)
A 		27.1
(-0.6)
A 		39.6
(3)
A 		21
C 37.6
(3)
A 		3.7
(-2.8)
A 		2.3
(-3)
A 		32
(2)
A 		35
avr 28.7
(0.4) 		14.7
(-2.5) 		12.5
(-3) 		41.3
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 4.6
(-2.5)
A 		2.4
(-3)
A 		27.2
(3)
A 		25
(2.5)
A 		18.7
(0.9)
A 		25.2
(2.5)
A 		25
B 11.9
(-1.6)
A 		5.8
(-2.5)
A 		23
(0.2)
A 		2.7
(-3)
A 		41.3
(3)
A 		38
(2.5)
M 		39
C 7.3
(-2.4)
A 		28.5
(0.6)
A 		2.8
(-3)
A 		4.7
(-2.7)
A 		15.9
(-1.2)
A 		45.4
(3)
P 		43
avr 7.9
(-3) 		12.2
(-2.1) 		17.7
(-0.9) 		10.8
(-2.4) 		25.3
(0.7) 		36.2
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.9
(3)
A 		4.7
(-0.8)
A 		2.2
(-3)
A 		7.6
(1.8)
A 		7
B 7.7
(1.9)
A 		4.6
(-3)
A 		6.3
(-0.3)
A 		8.4
(3)
A 		4
C 12.5
(3)
A 		1.1
(-2.8)
A 		0.8
(-3)
A 		5.4
(-0.6)
A 		12
avr 9.7
(3) 		3.5
(-2.6) 		3.1
(-3) 		7.1
(0.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.9
(-3)
A 		0.9
(-3)
A 		5.9
(2.6)
A 		6.3
(3)
A 		5.7
(2.3)
A 		6.1
(2.8)
A 		5
B 4.1
(-1.7)
A 		1.9
(-2.6)
A 		5.6
(-1.2)
A 		0.7
(-3)
A 		16.8
(3)
A 		14.2
(2)
M 		16
C 2.7
(-2.2)
A 		8.7
(0.3)
A 		0.7
(-3)
A 		0.9
(-2.9)
A 		5.1
(-1.2)
A 		15.2
(3)
P 		15
avr 2.6
(-3) 		3.8
(-2.2) 		4.1
(-2) 		2.6
(-3) 		9.2
(1.3) 		11.8
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183514_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.148
Sequence Type Exemplar sequence
Representative Public ID F47G6.3 NCBI
Target Description F47G6.3 /REP_DB=WormBase Gene ID /WP=CE17840 /TR=Q9TZI8 /GB=AAK18954.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058457 NCBI Caenorhabditis elegans F47G6.3 (F47G6.3) mRNA, complete cds. 11/11 A 
SNAP00000020129 ENSEMBL cdna:SNAP chromosome:CEL140:I:1465633:1472184:1 10/11 None
GENEFINDER00000020138 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1465633:1479861:1 10/11 None
F47G6.3 ENSEMBL cdna:known chromosome:CEL140:I:1465633:1469537:1 gene:F47G6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1465632-1469537(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47G6.3
Entrez Gene 171713 Entrez gene
SwissProt Q9TZI8 EMBL-EBI
WormBase CE34310 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18953 Hypothetical protein F47G6.2 [Caenorhabditis elegans] ref|NP_490859.1| F47G6.2 [Caenorhabditis elegans] 0.0
blast CAE74530 Hypothetical protein CBG22284 [Caenorhabditis briggsae] 0.0
blast T33511 hypothetical protein F47G6.2 - Caenorhabditis elegans 0.0
blast AAK18954 Hypothetical protein F47G6.3 [Caenorhabditis elegans] ref|NP_490858.3| F47G6.3 [Caenorhabditis elegans] 1.0E-134
blast AAK18954 Hypothetical protein F47G6.3 [Caenorhabditis elegans] ref|NP_490858.3| F47G6.3 [Caenorhabditis elegans] 1.0E-121
blast T33510 hypothetical protein F47G6.3 - Caenorhabditis elegans 6.0E-78
blast T33510 hypothetical protein F47G6.3 - Caenorhabditis elegans 2.0E-66
blast CAE71380 Hypothetical protein CBG18287 [Caenorhabditis briggsae] 8.0E-56
Protein Families
Method ID Description E-Value
ec 4CL1_ARATH (Q42524) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) 4.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 1.6E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490858.3 1 218-240
F47G6.3 1 218-240
SNAP00000020129 1 218-240
GENEFINDER00000020138 1 216-238
Sequence
Target Sequence 
>C. ELEGANS:183514_S_AT
gagcgagatgacattgatccagtatgacagcctcttggtcgtggattccatattcgatta
cttgcgaaatgagaccgttcttcgagagaataactgcccgggattggttcaaggattctt
taagccggtttatgagtcgactcttttaaacctcaaaagacagcacaaaaatgttacaaa
tgcgatgaaagcggtcactcaaacggaacagattctgaacatgaactttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGAGATGACATTGATCCAGTAT 695 385 939 Antisense
GATCCAGTATGACAGCCTCTTGGTC 69 415 954 Antisense
AGCCTCTTGGTCGTGGATTCCATAT 520 83 967 Antisense
GTGGATTCCATATTCGATTACTTGC 391 489 979 Antisense
GAAATGAGACCGTTCTTCGAGAGAA 452 361 1004 Antisense
CTTCGAGAGAATAACTGCCCGGGAT 62 221 1018 Antisense
AACTGCCCGGGATTGGTTCAAGGAT 552 141 1030 Antisense
TGGTTCAAGGATTCTTTAAGCCGGT 637 551 1043 Antisense
TTAAGCCGGTTTATGAGTCGACTCT 150 685 1058 Antisense
TGAGTCGACTCTTTTAAACCTCAAA 536 565 1071 Antisense
GAACAGATTCTGAACATGAACTTTG 575 351 1144 Antisense
Sequence Source Affymetrix Proprietary Database