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[183512_at]

Description F44A2.7 /REP_DB=WormBase Gene ID /WP=CE04574 /TR=Q20382 /GB=AAA83448.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 56      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 58.7
(1.5)
A 		24.8
(-1.5)
A 		76.6
(3)
A 		7.1
(-3)
A 		70
B 57.9
(-0.7)
A 		31.9
(-3)
A 		101.1
(3)
A 		51.9
(-1.3)
A 		69
C 42
(-0.2)
A 		72
(3)
A 		42
(-0.2)
A 		16
(-3)
A 		56
avr 52.9
(0.5) 		42.9
(-0.8) 		73.2
(3) 		25
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 401
1 2 3 4 5 6 range
A 7.9
(-3)
A 		26.3
(-2.7)
A 		377
(3)
P 		285.4
(1.5)
P 		164.1
(-0.5)
P 		74.6
(-1.9)
A 		369
B 29.7
(-3)
A 		47.3
(-2.7)
A 		409.1
(3)
P 		351
(2.1)
P 		119.5
(-1.6)
P 		53.7
(-2.6)
A 		379
C 29.4
(-3)
A 		69.3
(-2.2)
A 		298.5
(2.4)
P 		327.4
(3)
P 		144.7
(-0.7)
P 		88.5
(-1.8)
P 		298
avr 22.3
(-3) 		47.6
(-2.6) 		361.5
(3) 		321.3
(2.3) 		142.8
(-0.9) 		72.3
(-2.1) 		339
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 21.4
(3)
A 		5.4
(-1.7)
A 		20
(2.6)
A 		1
(-3)
A 		20
B 18.5
(1.1)
A 		7.9
(-3)
A 		23.4
(3)
A 		11.1
(-1.8)
A 		16
C 13.9
(0.7)
A 		20.7
(3)
A 		14.6
(1)
A 		2.7
(-3)
A 		18
avr 17.9
(2.4) 		11.3
(-0.3) 		19.3
(3) 		4.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 1.5
(-3)
A 		9.3
(-2.4)
A 		82.1
(3)
P 		72.4
(2.3)
P 		49.5
(0.6)
P 		18.2
(-1.8)
A 		81
B 10.3
(-3)
A 		15.7
(-2.6)
A 		99.3
(3)
P 		93
(2.6)
P 		48.5
(-0.4)
P 		20
(-2.3)
A 		89
C 10.9
(-3)
A 		21.1
(-2.1)
A 		76
(3)
P 		65.8
(2.1)
P 		46.8
(0.3)
P 		29.6
(-1.3)
P 		65
avr 7.6
(-3) 		15.4
(-2.4) 		85.8
(3) 		77.1
(2.3) 		48.3
(0.1) 		22.6
(-1.8) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183512_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11613
Sequence Type Exemplar sequence
Representative Public ID F44A2.7 NCBI
Target Description F44A2.7 /REP_DB=WormBase Gene ID /WP=CE04574 /TR=Q20382 /GB=AAA83448.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073007(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073007 NCBI Caenorhabditis elegans F44A2.7 (F44A2.7) mRNA, complete cds. 11/11 None
GENEFINDER00000038860 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9324087:9325489:1 11/11 None
F44A2.7 ENSEMBL cdna:known chromosome:CEL140:V:9324087:9325590:1 gene:F44A2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038854 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9324086-9325590(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44A2.7
Entrez Gene 185721 Entrez gene
SwissProt Q20382 EMBL-EBI
WormBase CE35308 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83448 Hypothetical protein F44A2.7 [Caenorhabditis elegans] ref|NP_505408.2| F44A2.7 [Caenorhabditis elegans] 0.0
blast AAA83448 Hypothetical protein F44A2.7 [Caenorhabditis elegans] ref|NP_505408.2| F44A2.7 [Caenorhabditis elegans] 1.0E-154
blast AAK73896 Hypothetical protein T24A6.20 [Caenorhabditis elegans] ref|NP_503996.2| T24A6.20 [Caenorhabditis elegans] 6.0E-57
blast CAE58208 Hypothetical protein CBG01303 [Caenorhabditis briggsae] 1.0E-54
blast AAK73896 Hypothetical protein T24A6.20 [Caenorhabditis elegans] ref|NP_503996.2| T24A6.20 [Caenorhabditis elegans] 6.0E-40
blast CAE58208 Hypothetical protein CBG01303 [Caenorhabditis briggsae] 3.0E-37
Sequence
Target Sequence 
>C. ELEGANS:183512_AT
gatcataattgctttctttttggagttggaacaatgtggcagtggtatgaaaaacgctat
gggttcaaagagttgagcccatactttcattgctcagcagtaatacaaattgaaaatttg
aaaattccatcaggaatcaaagaagttgatggggtaactgtggaagatttgaagtacgat
agtgtatcggaatacgataaaggaatttgtaagatgagcagaactaaagttattaacact
tggttaatggcttgtggagtacattcaaaaatggctgtagattcaaacggcaactgtgtg
ggtttcggagctatccgtgaagtatcgctcaatcgtctcaccatctcacctctatattcc
gattgcccagaaatcgctgctatgatcctcaaatcaattttaaactctttcgaattctca
acgtttaaaagtctctctacgatatatccttccacaaatttagctattccattcgtttta
accccattctgtgacggtgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCATAATTGCTTTCTTTTTGGAG 317 421 442 Antisense
GAGTTGAGCCCATACTTTCATTGCT 254 397 511 Antisense
ATGGCTGTAGATTCAAACGGCAACT 166 51 712 Antisense
ACTGTGTGGGTTTCGGAGCTATCCG 191 95 734 Antisense
CGTGAAGTATCGCTCAATCGTCTCA 369 245 757 Antisense
CCTCTATATTCCGATTGCCCAGAAA 706 267 790 Antisense
AAATCGCTGCTATGATCCTCAAATC 637 117 812 Antisense
TAAACTCTTTCGAATTCTCAACGTT 295 641 842 Antisense
AAGTCTCTCTACGATATATCCTTCC 424 157 870 Antisense
ATCCTTCCACAAATTTAGCTATTCC 15 41 887 Antisense
TTAACCCCATTCTGTGACGGTGTTT 644 683 919 Antisense
Sequence Source Affymetrix Proprietary Database