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[183511_at]

Description F40G9.8 /REP_DB=WormBase Gene ID /WP=CE19855 /TR=Q9TZ79 /GB=AAC68793.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 0      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 41.9
(-0.2)
A 		16.9
(-3)
A 		37.2
(-0.8)
A 		71.4
(3)
A 		55
B 11
(-3)
A 		15.8
(-2.4)
A 		56.2
(3)
A 		43.1
(1.3)
A 		45
C 18.4
(-2.4)
A 		15
(-2.8)
A 		12.8
(-3)
A 		69.8
(3)
A 		57
avr 23.8
(-2) 		15.9
(-3) 		35.4
(-0.4) 		61.4
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 19.6
(-1.2)
A 		37.2
(1.1)
A 		5
(-3)
A 		52.7
(3)
A 		25.6
(-0.4)
A 		18.9
(-1.3)
A 		48
B 19.8
(-1)
A 		21
(-0.8)
A 		6.6
(-3)
A 		41
(2.2)
A 		46.4
(3)
A 		17.1
(-1.4)
A 		40
C 16.6
(-2.6)
A 		53.3
(0.4)
A 		55.2
(0.5)
A 		86.2
(3)
A 		11.7
(-3)
A 		39.1
(-0.8)
A 		75
avr 18.7
(-3) 		37.2
(-0.3) 		22.3
(-2.5) 		60
(3) 		27.9
(-1.7) 		25
(-2.1) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 15.3
(3)
A 		3.7
(-3)
A 		9.7
(0.1)
A 		10.5
(0.5)
A 		12
B 3.5
(-3)
A 		3.9
(-2.7)
A 		13
(3)
A 		9.2
(0.6)
A 		10
C 6.1
(-1.6)
A 		4.3
(-3)
A 		4.5
(-2.8)
A 		11.8
(3)
A 		8
avr 8.3
(1) 		4
(-3) 		9.1
(1.7) 		10.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 3.6
(-1.8)
A 		13.2
(2.9)
A 		1.1
(-3)
A 		13.4
(3)
A 		7.7
(0.2)
A 		4.6
(-1.3)
A 		12
B 6.9
(-1.2)
A 		7
(-1.1)
A 		1.6
(-3)
A 		10.9
(0.2)
A 		18.8
(3)
A 		6.4
(-1.3)
A 		17
C 6.1
(-2)
A 		16.3
(2.6)
A 		14
(1.5)
A 		17.3
(3)
A 		3.8
(-3)
A 		13.1
(1.1)
A 		14
avr 5.5
(-3) 		12.2
(1.8) 		5.6
(-2.9) 		13.9
(3) 		10.1
(0.3) 		8
(-1.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183511_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8155
Sequence Type Exemplar sequence
Representative Public ID F40G9.8 NCBI
Target Description F40G9.8 /REP_DB=WormBase Gene ID /WP=CE19855 /TR=Q9TZ79 /GB=AAC68793.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064763(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064763 NCBI Caenorhabditis elegans F40G9.8 (F40G9.8) mRNA, complete cds. 11/11 None
SNAP00000021764 ENSEMBL cdna:SNAP chromosome:CEL140:III:163252:164874:-1 10/11 None
GENEFINDER00000021788 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:163699:164874:-1 11/11 None
F40G9.8 ENSEMBL cdna:known chromosome:CEL140:III:163597:164874:-1 gene:F40G9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:163596-164874(-) 99.64 100.0
Public Domain and Genome References
Gene Title
Ensembl F40G9.8
Entrez Gene 185556 Entrez gene
SwissProt Q9TZ79 EMBL-EBI
WormBase CE19855 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68793 Hypothetical protein F40G9.8 [Caenorhabditis elegans] ref|NP_497164.1| F40G9.8 [Caenorhabditis elegans] 1.0E-148
blast AAC68793 Hypothetical protein F40G9.8 [Caenorhabditis elegans] ref|NP_497164.1| F40G9.8 [Caenorhabditis elegans] 1.0E-139
blast AAC68793 Hypothetical protein F40G9.8 [Caenorhabditis elegans] ref|NP_497164.1| F40G9.8 [Caenorhabditis elegans] 1.0E-123
blast AAC26956 Hypothetical protein T17A3.10 [Caenorhabditis elegans] ref|NP_497161.1| T17A3.10 [Caenorhabditis elegans] 2.0E-57
blast AAC26956 Hypothetical protein T17A3.10 [Caenorhabditis elegans] ref|NP_497161.1| T17A3.10 [Caenorhabditis elegans] 2.0E-53
blast CAA91990 Hypothetical protein F59F3.1 [Caenorhabditis elegans] ref|NP_509836.1| VEGF (vascular endothelial growth factor) Receptor family member (ver-3) [Caenorhabditis elegans] 5.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497164.1 1 232-254
F40G9.8 1 232-254
GENEFINDER00000021788 1 232-254
Sequence
Target Sequence 
>C. ELEGANS:183511_AT
aagacctcgaggtgcggtgttggaaagtggggaagaaaatcccatccatcaaactaatca
atgttgctgatggacctgccaaaactttttatgagttcgaaaaatcctcacatctgcaaa
aatccgcgtacgatggggatacggtccacttaatctgctccatcccccattctgcaacaa
attgggaagtctcctggcttcccgatctgccagtcaacacaaggatccatgaaaagtcca
agtactttatttcaactctaagaaacatctcaagttatgaagtatgcacttgtgttatca
aaaccgacaagtttgaaccaatgttcttggaaactgtaattgatgtgaagccggcttcag
cttcagcaccgtccgaaatgccgttcacaggaggttccagcaaacaatctctgctttttt
atattctactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACCTCGAGGTGCGGTGTTGGAA 97 153 299 Antisense
GAAAATCCCATCCATCAAACTAATC 389 353 333 Antisense
AGTTCGAAAAATCCTCACATCTGCA 160 65 392 Antisense
CACATCTGCAAAAATCCGCGTACGA 452 195 407 Antisense
TGGGGATACGGTCCACTTAATCTGC 448 551 432 Antisense
CATCCCCCATTCTGCAACAAATTGG 37 211 459 Antisense
TTGGGAAGTCTCCTGGCTTCCCGAT 6 705 480 Antisense
CCCGATCTGCCAGTCAACACAAGGA 334 261 499 Antisense
AAATGCCGTTCACAGGAGGTTCCAG 175 111 674 Antisense
GGAGGTTCCAGCAAACAATCTCTGC 94 517 688 Antisense
ATCTCTGCTTTTTTATATTCTACTG 373 33 705 Antisense
Sequence Source Affymetrix Proprietary Database