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[183510_at]

Description R03A10.2 /REP_DB=WormBase Gene ID /WP=CE06208 /TR=Q21656 /GB=CAA93671.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 85      6grp_highest_nonorm > 73      6grp_total > 0      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2339
1 2 3 4 range
A 336.7
(-2.6)
P 		236.5
(-2.9)
P 		198.7
(-3)
A 		2104.6
(3)
P 		1906
B 268.8
(-2.7)
P 		232
(-2.8)
P 		168.7
(-3)
A 		2205.7
(3)
P 		2037
C 255.2
(-2.8)
P 		243.3
(-2.8)
A 		163.2
(-3)
A 		2502.6
(3)
P 		2339
avr 286.9
(-2.7) 		237.3
(-2.8) 		176.9
(-3) 		2271
(3) 		2094

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 399.1
(-3)
P 		430
(-1.8)
P 		438.3
(-1.4)
P 		475.5
(0)
P 		550.8
(3)
P 		471.4
(-0.1)
P 		152
B 366.8
(-3)
P 		556.6
(0.9)
P 		658.1
(3)
P 		446.9
(-1.4)
P 		572.2
(1.2)
P 		592.8
(1.7)
P 		291
C 379.7
(-2.9)
P 		647.2
(3)
P 		373.8
(-3)
P 		478.5
(-0.7)
P 		476.5
(-0.7)
P 		541.5
(0.7)
P 		273
avr 381.9
(-3) 		544.6
(3) 		490.1
(1) 		467
(0.1) 		533.2
(2.6) 		535.2
(2.7) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 122.6
(-1.3)
P 		51.3
(-3)
P 		51.9
(-3)
A 		308.1
(3)
P 		257
B 85.7
(-2.4)
P 		57.3
(-2.7)
P 		39.1
(-3)
A 		470
(3)
P 		431
C 84.5
(-2.5)
P 		70
(-2.8)
A 		56.9
(-3)
A 		422
(3)
P 		365
avr 97.6
(-2.2) 		59.5
(-2.8) 		49.3
(-3) 		400
(3) 		351

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 73.6
(-3)
P 		152.9
(2.1)
P 		95.5
(-1.6)
P 		120.6
(0)
P 		166.2
(3)
P 		114.8
(-0.3)
P 		93
B 127.6
(-2.5)
P 		185.3
(0.5)
P 		159.8
(-0.8)
P 		118.4
(-3)
P 		232.5
(3)
P 		221.1
(2.4)
P 		114
C 140.7
(-0.3)
P 		197.5
(3)
P 		95.1
(-3)
P 		96.2
(-2.9)
P 		154.2
(0.5)
P 		181.3
(2.1)
P 		102
avr 114
(-2.8) 		178.6
(2.5) 		116.8
(-2.6) 		111.7
(-3) 		184.3
(3) 		172.4
(2) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183510_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17644
Sequence Type Exemplar sequence
Representative Public ID R03A10.2 NCBI
Target Description R03A10.2 /REP_DB=WormBase Gene ID /WP=CE06208 /TR=Q21656 /GB=CAA93671.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078150 NCBI Caenorhabditis elegans R03A10.2 (R03A10.2) mRNA, complete cds. 11/11 None
R03A10.2 ENSEMBL cdna:known chromosome:CEL140:X:15433715:15435271:1 gene:R03A10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023408 4/11 Cross Hyb Matching Probes None
GENEFINDER00000023414 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15433714-15435271(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03A10.2
Entrez Gene 187533 Entrez gene
SwissProt Q21656 EMBL-EBI
WormBase CE06208 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93671 Hypothetical protein R03A10.2 [Caenorhabditis elegans] ref|NP_510551.1| R03A10.2 [Caenorhabditis elegans] 1.0E-68
blast CAE63312 Hypothetical protein CBG07702 [Caenorhabditis briggsae] 2.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510551.1 1 4-23
R03A10.2 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:183510_AT
gtcttcgtggaagccatgccaagcatgagaccggcgaaaaaggcgatgcgcaactcgttg
gtgcggtttgggaaacgagccgatccagttggcaccgacgatgtttttctaggagagtca
tacggatctgctgaccccatttgtgtgtgtgttttttttttcaatttcttcattcaagat
attgttaataaaagtattcatgtgaagttccctatttttgaacaaaagcctggtcggact
cgaactaaagatacaccactaccacctgaaccctcatttttggaaacaattgttcgtcaa
tgttttcggattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTCGTGGAAGCCATGCCAAGCA 306 467 61 Antisense
AAAGGCGATGCGCAACTCGTTGGTG 398 121 99 Antisense
GCAACTCGTTGGTGCGGTTTGGGAA 163 317 110 Antisense
GAAACGAGCCGATCCAGTTGGCACC 20 359 132 Antisense
GTTGGCACCGACGATGTTTTTCTAG 45 437 148 Antisense
AGAGTCATACGGATCTGCTGACCCC 227 69 174 Antisense
GTATTCATGTGAAGTTCCCTATTTT 417 453 254 Antisense
GAACAAAAGCCTGGTCGGACTCGAA 636 349 280 Antisense
AACTAAAGATACACCACTACCACCT 69 139 303 Antisense
TACCACCTGAACCCTCATTTTTGGA 468 647 320 Antisense
ATTGTTCGTCAATGTTTTCGGATTT 583 1 349 Antisense
Sequence Source Affymetrix Proprietary Database