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[183509_at]

Description F45H10.2 /REP_DB=WormBase Gene ID /WP=CE10544 /TR=O45525 /GB=CAB04384.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 27      6grp_total > 52      4grp_total > 49      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2933
1 2 3 4 range
A 6361.4
(-3)
P 		9292
(3)
P 		8690.4
(1.8)
P 		6565.8
(-2.6)
P 		2931
B 6494
(-3)
P 		7906.1
(0.2)
P 		9156.4
(3)
P 		6923.9
(-2)
P 		2662
C 6359.3
(-3)
P 		8426.3
(3)
P 		8322.1
(2.7)
P 		6895.7
(-1.4)
P 		2067
avr 6404.9
(-3) 		8541.5
(2.5) 		8723
(3) 		6795.1
(-2) 		2318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5659
1 2 3 4 5 6 range
A 7885.5
(0.2)
P 		7593.3
(-0.1)
P 		10090.4
(3)
P 		8727.4
(1.3)
P 		5951.9
(-2.2)
P 		5286.7
(-3)
P 		4804
B 7053.3
(-1.2)
P 		6925.5
(-1.3)
P 		10946
(3)
P 		7515.5
(-0.7)
P 		6365.6
(-1.9)
P 		5368.4
(-3)
P 		5578
C 7403.8
(-0.6)
P 		6983
(-1.6)
P 		9082.7
(3)
P 		7412.8
(-0.6)
P 		7117.2
(-1.3)
P 		6314.9
(-3)
P 		2768
avr 7447.5
(-0.5) 		7167.3
(-0.9) 		10039.7
(3) 		7885.2
(0.1) 		6478.2
(-1.9) 		5656.7
(-3) 		4383
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1939
1 2 3 4 range
A 2316.2
(3)
P 		2017
(1.7)
P 		2271.8
(2.8)
P 		961.1
(-3)
P 		1355
B 2070.9
(2.5)
P 		1952.6
(1.4)
P 		2121.7
(3)
P 		1475.5
(-3)
P 		646
C 2105.1
(0.3)
P 		2422.6
(1.3)
P 		2900.5
(3)
P 		1162.7
(-3)
P 		1738
avr 2164.1
(1.7) 		2130.7
(1.5) 		2431.3
(3) 		1199.8
(-3) 		1232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1457
1 2 3 4 5 6 range
A 1453.6
(-2.3)
P 		2700.6
(3)
P 		2197.5
(0.9)
P 		2213.5
(0.9)
P 		1796
(-0.8)
P 		1287.1
(-3)
P 		1414
B 2454.2
(1.2)
P 		2305.2
(-0.2)
P 		2658
(3)
P 		1990.6
(-3)
P 		2586.3
(2.4)
P 		2001.9
(-2.9)
P 		667
C 2744.3
(3)
P 		2130.7
(0.1)
P 		2311.7
(0.9)
P 		1490.7
(-3)
P 		2303
(0.9)
P 		2114
(-0)
P 		1254
avr 2217.4
(1.2) 		2378.8
(2.9) 		2389.1
(3) 		1898.3
(-2) 		2228.4
(1.4) 		1801
(-3) 		588
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183509_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2986
Sequence Type Exemplar sequence
Representative Public ID F45H10.2 NCBI
Target Description F45H10.2 /REP_DB=WormBase Gene ID /WP=CE10544 /TR=O45525 /GB=CAB04384.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064437 NCBI Caenorhabditis elegans F45H10.2 (F45H10.2) mRNA, complete cds. 11/11 None
SNAP00000000152 ENSEMBL cdna:SNAP chromosome:CEL140:II:13491880:13492938:-1 11/11 None
GENEFINDER00000000160 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13491880:13492938:-1 10/11 None
F45H10.2.2 ENSEMBL cdna:known chromosome:CEL140:II:13491699:13492944:-1 gene:F45H10.2 11/11 None
F45H10.2.1 ENSEMBL cdna:known chromosome:CEL140:II:13491742:13492946:-1 gene:F45H10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13491876-13492935(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45H10.2
Entrez Gene 174992 Entrez gene
SwissProt O45525 EMBL-EBI
WormBase CE10544 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8121 ubiquinol-cytochrome-c reductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04384 Hypothetical protein F45H10.2 [Caenorhabditis elegans] ref|NP_496838.1| F45H10.2 [Caenorhabditis elegans] 8.0E-50
blast NP_508996 R07E4.3 [Caenorhabditis elegans] gb|AAA80402.1| Hypothetical protein R07E4.3 [Caenorhabditis elegans] 8.0E-48
blast CAE73342 Hypothetical protein CBG20773 [Caenorhabditis briggsae] 1.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR004205 EMBL-EBI UcrQ 4.3E-49
Pfam IPR004205 EMBL-EBI UcrQ 8.0E-29
Pfam IPR004205 EMBL-EBI UcrQ 3.0E-13
Sequence
Target Sequence 
>C. ELEGANS:183509_AT
gagaccgaccgtcgtttcaatgggcaaacactttggaaatctcggcaagatgtacggaga
gcaccgcttcgcgcttgctccaaacgagcaaaaggcctacaagggattcttcgatcaggc
ctttgttaagaccttcaagacctacgtctgggatcagtggtattactacattccacagac
catcggagcctacttgctctacgactgggccaagaagacgaacgtcgccgccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACCGACCGTCGTTTCAATGGGC 158 393 15 Antisense
AGATGTACGGAGAGCACCGCTTCGC 631 67 62 Antisense
CTTCGCGCTTGCTCCAAACGAGCAA 556 219 81 Antisense
GGCCTACAAGGGATTCTTCGATCAG 363 537 108 Antisense
GATCAGGCCTTTGTTAAGACCTTCA 321 415 127 Antisense
AAGACCTTCAAGACCTACGTCTGGG 584 151 142 Antisense
GACCTACGTCTGGGATCAGTGGTAT 427 383 153 Antisense
GTATTACTACATTCCACAGACCATC 194 453 174 Antisense
TACATTCCACAGACCATCGGAGCCT 569 643 181 Antisense
TACTTGCTCTACGACTGGGCCAAGA 10 645 205 Antisense
CAAGAAGACGAACGTCGCCGCCAAC 328 183 225 Antisense
Sequence Source Affymetrix Proprietary Database