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[183508_at]

Description C26B2.6 /REP_DB=WormBase Gene ID /WP=CE04092 /TR=Q18195 /GB=AAC24262.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 86      6grp_total > 85      4grp_total > 04      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1668
1 2 3 4 range
A 1022.4
(-1.6)
P 		673.1
(-3)
P 		813.5
(-2.5)
P 		2209.2
(3)
P 		1536
B 1064.3
(-1.4)
P 		747.6
(-3)
P 		768.3
(-2.9)
P 		1939.8
(3)
P 		1192
C 1050.9
(-1.6)
P 		668.2
(-3)
P 		775.1
(-2.6)
P 		2336.1
(3)
P 		1668
avr 1045.9
(-1.6) 		696.3
(-3) 		785.6
(-2.6) 		2161.7
(3) 		1465

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 583
1 2 3 4 5 6 range
A 1005.6
(0.8)
P 		709.6
(-3)
P 		1016.8
(1)
P 		956.9
(0.2)
P 		1153.9
(2.7)
P 		1174.9
(3)
P 		465
B 871.9
(-3)
P 		880.8
(-2.9)
P 		1075.9
(0.2)
P 		1228.5
(2.7)
P 		1195.7
(2.2)
P 		1249.1
(3)
P 		377
C 678
(-3)
P 		981.5
(0.1)
P 		857.2
(-1.2)
P 		1260.7
(3)
P 		832.6
(-1.4)
P 		1089.3
(1.2)
P 		583
avr 851.8
(-3) 		857.3
(-2.9) 		983.3
(-0.5) 		1148.7
(2.6) 		1060.7
(0.9) 		1171.1
(3) 		319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 372.2
(3)
P 		146.1
(-3)
P 		212.7
(-1.2)
P 		323.4
(1.7)
P 		226
B 339.4
(1.1)
P 		184.6
(-2.8)
P 		178
(-3)
P 		413.4
(3)
P 		235
C 347.9
(1.6)
P 		192.1
(-3)
P 		270.2
(-0.7)
P 		393.9
(3)
P 		202
avr 353.2
(2.3) 		174.3
(-3) 		220.3
(-1.6) 		376.9
(3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 185.4
(-3)
P 		252.4
(-0.5)
P 		221.4
(-1.7)
P 		242.7
(-0.9)
P 		348.2
(3)
P 		286
(0.7)
P 		163
B 303.4
(-1.9)
P 		293.2
(-2.1)
P 		261.3
(-3)
P 		325.4
(-1.3)
P 		485.8
(3)
P 		465.8
(2.5)
P 		225
C 251.3
(-1.6)
P 		299.5
(0.3)
P 		218.2
(-3)
P 		253.5
(-1.6)
P 		269.4
(-0.9)
P 		364.6
(3)
P 		146
avr 246.7
(-2.4) 		281.7
(-0.9) 		233.6
(-3) 		273.9
(-1.3) 		367.8
(2.8) 		372.1
(3) 		139
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183508_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8949
Sequence Type Exemplar sequence
Representative Public ID C26B2.6 NCBI
Target Description C26B2.6 /REP_DB=WormBase Gene ID /WP=CE04092 /TR=Q18195 /GB=AAC24262.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068942(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068942 NCBI Caenorhabditis elegans C26B2.6 (C26B2.6) mRNA, complete cds. 11/11 None
SNAP00000044201 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8016986:8018115:1 11/11 None
GENEFINDER00000044212 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8016986:8018115:1 11/11 None
C26B2.6 ENSEMBL cdna:known chromosome:CEL140:IV:8016986:8018185:1 gene:C26B2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8016991-8018121(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26B2.6
Entrez Gene 182929 Entrez gene
SwissProt Q18195 EMBL-EBI
WormBase CE04092 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256412_AT Paxneb protein-related at
CANINE_2:CFAAFFX.12133.1.S1_AT similar to elongation protein 4 homolog cfa
DROSOPHILA_2:1641683_AT dm
DROSGENOME1:145826_AT dm
CHICKEN:GGAAFFX.7693.1.S1_AT similar to elongation protein 4 homolog; PAX6 neighbor gene; chromosome 11 open reading frame 19 gga
CHICKEN:GGAAFFX.7693.2.S1_AT similar to elongation protein 4 homolog; PAX6 neighbor gene; chromosome 11 open reading frame 19 gga
CHICKEN:GGAAFFX.7693.2.S1_S_AT similar to elongation protein 4 homolog; PAX6 neighbor gene; chromosome 11 open reading frame 19 gga
HG-U133A:203829_AT elongation protein 4 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:203829_AT elongation protein 4 homolog (S. cerevisiae) hs
HG-U133A_2:203829_AT elongation protein 4 homolog (S. cerevisiae) hs
HU35KSUBD:RC_AA404516_S_AT elongation protein 4 homolog (S. cerevisiae) hs
U133_X3P:G9506684_3P_AT elongation protein 4 homolog (S. cerevisiae) hs
HG-U95AV2:38347_AT elongation protein 4 homolog (S. cerevisiae) hs
U133_X3P:HS2.382627.1.S1_3P_X_AT Elongation protein 4 homolog (S. cerevisiae) hs
U133_X3P:HS2.382627.1.S1_3P_AT Elongation protein 4 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:1570335_AT Elongation protein 4 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:241099_AT Elongation protein 4 homolog (S. cerevisiae) hs
HG-U133B:241099_AT Elongation protein 4 homolog (S. cerevisiae) hs
HG-U95D:82501_AT Elongation protein 4 homolog (S. cerevisiae) hs
HG-U95D:83276_AT Elongation protein 4 homolog (S. cerevisiae) hs
U133_X3P:HS.166517.0.A1_3P_AT Elongation protein 4 homolog (S. cerevisiae) hs
MG-U74BV2:110856_AT elongation protein 4 homolog (S. cerevisiae) mm
MG-U74CV2:133940_AT elongation protein 4 homolog (S. cerevisiae) mm
MG-U74BV2:163982_AT elongation protein 4 homolog (S. cerevisiae) mm
MOE430A:1448535_AT elongation protein 4 homolog (S. cerevisiae) mm
MOUSE430A_2:1448535_AT elongation protein 4 homolog (S. cerevisiae) mm
MOUSE430_2:1448535_AT elongation protein 4 homolog (S. cerevisiae) mm
MOE430A:1416987_AT elongation protein 4 homolog (S. cerevisiae) mm
MOUSE430A_2:1416987_AT elongation protein 4 homolog (S. cerevisiae) mm
MOUSE430_2:1416987_AT elongation protein 4 homolog (S. cerevisiae) mm
MU11KSUBB:W78448_S_AT Elongation protein 4 homolog (S. cerevisiae) (Elp4), mRNA mm
MOUSE430_2:1437816_AT Elongation protein 4 homolog (S. cerevisiae) (Elp4), mRNA mm
MOE430A:1437816_AT Elongation protein 4 homolog (S. cerevisiae) (Elp4), mRNA mm
MOUSE430A_2:1437816_AT Elongation protein 4 homolog (S. cerevisiae) (Elp4), mRNA mm
MOUSE430_2:1447195_AT Elongation protein 4 homolog (S. cerevisiae) (Elp4), mRNA mm
MOE430B:1447195_AT Elongation protein 4 homolog (S. cerevisiae) (Elp4), mRNA mm
RG-U34A:RC_AA875129_AT similar to elongation protein 4 homolog rn
RAE230A:1391062_AT similar to elongation protein 4 homolog rn
RAT230_2:1391062_AT similar to elongation protein 4 homolog rn
Protein Similarities
Method ID Description E-Value
blast AAC24262 Hypothetical protein C26B2.6 [Caenorhabditis elegans] ref|NP_501343.1| C26B2.6 [Caenorhabditis elegans] 0.0
blast CAE70937 Hypothetical protein CBG17740 [Caenorhabditis briggsae] 1.0E-149
blast NP_076365 elongation protein 4 homolog [Mus musculus] dbj|BAE40769.1| unnamed protein product [Mus musculus] dbj|BAC30441.1| unnamed protein product [Mus musculus] dbj|BAC30351.1| unnamed protein product [Mus musculus] dbj|BAC28743.1| unnamed protein product [Mus musculus] dbj|BAC29704.1| unnamed protein product [Mus musculus] 1.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR008728 EMBL-EBI PAXNEB 1.6E-11
Sequence
Target Sequence 
>C. ELEGANS:183508_AT
cctcttcccttggaccattaagcaacgaaaatcagtatgactttacgaagcatgtagaga
atccgaatgttgacgtgtatgcggagaaagtttttacgctaaaagggatttacgagacgc
tctgccaaattgtaaaagaaaatgaagctcacacaaaatccggcggaagaggtggaccga
aaaagaatcttcttcgagtggttctgaagaatatcgatatggaaatttgtgaagattaca
agttccttggccgattcctgtgctgtctccgatctttagctcgttcgagttacatgattg
tatacatcacggctaactccttcagagttccgaaaccaacttggcgtatactggaatccg
cagctgatacacatattcaactgatgccgtttgatgaaaatgagaagaaaatgttcaaac
atcttggcactgctcatggatacttccatttgaagagtttgccccgattgatgtccgttg
gaacacacactccaccgattctcgatcttatttttgaagcaagttccagaaaaggtttcc
aaattcgagtgatgcatcttccacctgcatttgatgagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCTTCCCTTGGACCATTAAGCAA 35 269 389 Antisense
TTACGAGACGCTCTGCCAAATTGTA 405 681 498 Antisense
TCTCCGATCTTTAGCTCGTTCGAGT 243 611 654 Antisense
TATACATCACGGCTAACTCCTTCAG 138 659 689 Antisense
ACTGGAATCCGCAGCTGATACACAT 200 97 738 Antisense
CAAACATCTTGGCACTGCTCATGGA 539 191 804 Antisense
TGAAGAGTTTGCCCCGATTGATGTC 137 575 839 Antisense
TGATGTCCGTTGGAACACACACTCC 184 567 857 Antisense
ACTCCACCGATTCTCGATCTTATTT 281 99 877 Antisense
AATTCGAGTGATGCATCTTCCACCT 633 177 930 Antisense
ATCTTCCACCTGCATTTGATGAGCC 471 31 944 Antisense
Sequence Source Affymetrix Proprietary Database