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[183507_at]

Description K03A1.3 /REP_DB=WormBase Gene ID /WP=CE04711 /TR=Q21163 /GB=AAA83324.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 47      6grp_cgc > 03      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 82.1
(3)
P 		13.6
(-2.2)
A 		3.1
(-3)
A 		30.8
(-0.9)
A 		79
B 86.3
(3)
P 		45.6
(-1.2)
A 		28.3
(-3)
A 		37.3
(-2.1)
A 		58
C 108.4
(3)
P 		20.2
(-3)
A 		31.6
(-2.2)
A 		26.3
(-2.6)
A 		88
avr 92.3
(3) 		26.5
(-2.5) 		21
(-3) 		31.5
(-2.1) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 74.2
(2.8)
A 		76.6
(3)
A 		6.7
(-3)
A 		13.4
(-2.4)
A 		48.9
(0.6)
A 		16.5
(-2.2)
A 		70
B 55.3
(3)
A 		43.2
(1.5)
A 		7.7
(-3)
A 		32.8
(0.2)
A 		18.8
(-1.6)
A 		15.9
(-2)
A 		48
C 47.5
(1.4)
P 		52
(2.4)
A 		43.2
(0.5)
A 		26.1
(-3)
A 		55.1
(3)
A 		30.3
(-2.1)
A 		29
avr 59
(3) 		57.3
(2.7) 		19.2
(-3) 		24.1
(-2.3) 		40.9
(0.3) 		20.9
(-2.7) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 29.9
(3)
P 		2.9
(-2.6)
A 		0.8
(-3)
A 		4.5
(-2.2)
A 		29
B 27.5
(3)
P 		11.3
(-1.6)
A 		6.5
(-3)
A 		8
(-2.6)
A 		21
C 35.9
(3)
P 		5.8
(-2.7)
A 		11
(-1.7)
A 		4.4
(-3)
A 		32
avr 31.1
(3) 		6.7
(-2.7) 		6.1
(-2.9) 		5.6
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 13.7
(-0.2)
A 		27.3
(3)
A 		1.5
(-3)
A 		3.4
(-2.6)
A 		14.8
(0.1)
A 		4
(-2.4)
A 		26
B 19.2
(3)
A 		14.4
(1.3)
A 		1.9
(-3)
A 		8.7
(-0.6)
A 		7.6
(-1)
A 		5.9
(-1.6)
A 		17
C 17.6
(2.9)
P 		15.9
(2.1)
A 		11
(-0.2)
A 		5.2
(-3)
A 		17.8
(3)
A 		10.1
(-0.7)
A 		13
avr 16.8
(2) 		19.2
(3) 		4.8
(-3) 		5.8
(-2.6) 		13.4
(0.6) 		6.7
(-2.2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16296
Sequence Type Exemplar sequence
Representative Public ID K03A1.3 NCBI
Target Description K03A1.3 /REP_DB=WormBase Gene ID /WP=CE04711 /TR=Q21163 /GB=AAA83324.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029730(11), NM_171720(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029730 NCBI Caenorhabditis elegans UNCoordinated family member (unc-10) (unc-10) mRNA, complete cds. 11/11 None
NM_171720 NCBI Caenorhabditis elegans UNCoordinated family member (unc-10) (unc-10) mRNA, complete cds. 11/11 A 
T10A3.1b ENSEMBL cdna:known chromosome:CEL140:X:7272283:7280247:-1 gene:T10A3.1 11/11 A 
T10A3.1a ENSEMBL cdna:known chromosome:CEL140:X:7272494:7280247:-1 gene:T10A3.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013862 3/11 Cross Hyb Matching Probes None
GENEFINDER00000013869 8/11 Cross Hyb Matching Probes None
SNAP00000013863 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7276706-7280050(-) 100.0 100.0
Public Domain and Genome References
Ensembl T10A3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69088 Uncoordinated protein 10, isoform b [Caenorhabditis elegans] ref|NP_001024901.1| UNCoordinated family member (unc-10) [Caenorhabditis elegans] 0.0
blast AAB37028 Uncoordinated protein 10, isoform a [Caenorhabditis elegans] ref|NP_741831.1| UNCoordinated family member (unc-10) [Caenorhabditis elegans] gb|AAK49331.1| Rab3-interacting molecule UNC-10 [Caenorhabditis elegans] sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim) (Uncoordinated protein 10) 0.0
blast CAE65866 Hypothetical protein CBG11009 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 4.9E-9
Pfam IPR000008 EMBL-EBI C2 domain 1.1E-26
Pfam IPR000008 EMBL-EBI C2 domain 9.3E-16
Sequence
Target Sequence 
>C. ELEGANS:183507_AT
gaggaatgttcaataggcagccgtcattagagcaaactacgcccatgaacaaatacaatc
acgttgaggatgatggcatgaaccagcgacccacgttctacactggaaattccgagaatg
accaaagacaatttgatggccaaatgcaacagggctcacaacaaaataatcagaatcaga
accaaaacaaccgaaatcttagaaaaaacacagtcagccgggtaacagaggaggattatg
caagttcgtcaaacttcgaatctaagaaacagcggaacaactcttcacagagtcagtcca
acacgcaaggcgtgcgagcatgtccttctactgacgaccatttgaaccgggtgaaaaatc
gattgcataggcaacttcgatcaatgtcatcttctgaagaggatattattgctggaggcg
gtggtaacactttgaagatgtctacgtcagcagttgtggcctctggtgggaaaaccgcat
ttcatgatgatatgggagcgtcgaatgtgcagaggttgtccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAATGTTCAATAGGCAGCCGTC 65 405 1094 Antisense
TAGAGCAAACTACGCCCATGAACAA 500 651 1121 Antisense
GATGATGGCATGAACCAGCGACCCA 347 411 1162 Antisense
GACCCACGTTCTACACTGGAAATTC 124 381 1181 Antisense
GAAACAGCGGAACAACTCTTCACAG 42 357 1359 Antisense
TCTTCACAGAGTCAGTCCAACACGC 596 615 1375 Antisense
ACGCAAGGCGTGCGAGCATGTCCTT 695 91 1396 Antisense
CATGTCCTTCTACTGACGACCATTT 181 209 1412 Antisense
TGTCTACGTCAGCAGTTGTGGCCTC 143 559 1532 Antisense
TGTGGCCTCTGGTGGGAAAACCGCA 526 553 1548 Antisense
GCGTCGAATGTGCAGAGGTTGTCCG 557 291 1591 Antisense
Sequence Source Affymetrix Proprietary Database