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[183506_at]

Description F26A1.7 /REP_DB=WormBase Gene ID /WP=CE02688 /TR=Q19795 /GB=AAA68247.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 2.5
(-3)
A 		14.5
(-0.5)
A 		3.5
(-2.8)
A 		31.1
(3)
A 		29
B 3.5
(-3)
A 		40.5
(3)
A 		11.4
(-1.7)
A 		6.3
(-2.5)
A 		37
C 7.8
(-2.4)
A 		43
(1.3)
A 		2.6
(-3)
A 		58.7
(3)
A 		56
avr 4.6
(-3) 		32.7
(3) 		5.8
(-2.7) 		32
(2.9) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 6.2
(-3)
A 		15.3
(-1.2)
A 		10.6
(-2.1)
A 		8
(-2.6)
A 		34.7
(2.6)
A 		36.6
(3)
A 		30
B 40.5
(3)
A 		12.4
(-1.5)
A 		7.1
(-2.4)
A 		27.2
(0.9)
A 		13.2
(-1.4)
A 		3.2
(-3)
A 		37
C 3.1
(-3)
A 		57.2
(3)
A 		9.9
(-2.2)
A 		31.6
(0.2)
A 		3.3
(-3)
A 		13.2
(-1.9)
A 		54
avr 16.6
(-0.7) 		28.3
(3) 		9.2
(-3) 		22.3
(1.1) 		17.1
(-0.5) 		17.7
(-0.3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.9
(-3)
A 		3.1
(0.6)
A 		0.9
(-3)
A 		4.6
(3)
A 		4
B 1.1
(-3)
A 		10
(3)
A 		2.6
(-2)
A 		1.3
(-2.9)
A 		9
C 2.6
(-2.1)
A 		12.4
(3)
A 		0.9
(-3)
A 		9.9
(1.7)
A 		12
avr 1.5
(-3) 		8.5
(3) 		1.5
(-3) 		5.3
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.1
(-3)
A 		5.4
(-0.3)
A 		2.3
(-2.2)
A 		2
(-2.4)
A 		10.5
(3)
A 		8.9
(2)
A 		9
B 14.1
(3)
A 		4.1
(-1.7)
A 		1.7
(-2.8)
A 		7.2
(-0.2)
A 		5.4
(-1)
A 		1.2
(-3)
A 		13
C 1.1
(-3)
A 		17.4
(3)
A 		2.5
(-2.5)
A 		6.4
(-1)
A 		1.1
(-3)
A 		4.4
(-1.8)
A 		16
avr 5.4
(-0.2) 		9
(3) 		2.2
(-3) 		5.2
(-0.4) 		5.7
(0.1) 		4.8
(-0.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183506_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7348
Sequence Type Exemplar sequence
Representative Public ID F26A1.7 NCBI
Target Description F26A1.7 /REP_DB=WormBase Gene ID /WP=CE02688 /TR=Q19795 /GB=AAA68247.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065595(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065595 NCBI Caenorhabditis elegans F26A1.7 (F26A1.7) mRNA, complete cds. 11/11 None
SNAP00000001866 ENSEMBL cdna:SNAP chromosome:CEL140:III:4819374:4819904:-1 10/11 None
F26A1.7 ENSEMBL cdna:known chromosome:CEL140:III:4819289:4819904:-1 gene:F26A1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4819288-4819904(-) 96.22 100.0
Public Domain and Genome References
Gene Title
Ensembl F26A1.7
Entrez Gene 184947 Entrez gene
SwissProt Q19795 EMBL-EBI
WormBase CE02688 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497996 F26A1.7 [Caenorhabditis elegans] gb|AAA68247.1| Hypothetical protein F26A1.7 [Caenorhabditis elegans] 5.0E-76
blast NP_497996 F26A1.7 [Caenorhabditis elegans] gb|AAA68247.1| Hypothetical protein F26A1.7 [Caenorhabditis elegans] 1.0E-67
blast NP_497997 F26A1.8 [Caenorhabditis elegans] gb|AAA68248.1| Hypothetical protein F26A1.8 [Caenorhabditis elegans] 6.0E-45
blast CAE71122 Hypothetical protein CBG17976 [Caenorhabditis briggsae] 6.0E-45
blast NP_497997 F26A1.8 [Caenorhabditis elegans] gb|AAA68248.1| Hypothetical protein F26A1.8 [Caenorhabditis elegans] 2.0E-44
blast CAE71122 Hypothetical protein CBG17976 [Caenorhabditis briggsae] 2.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497996.1 3 55-74,89-111,124-146
F26A1.7 3 55-74,89-111,124-146
SNAP00000001866 2 55-74,89-111
Sequence
Target Sequence 
>C. ELEGANS:183506_AT
agcagaaaaagtcatcaatccacctgaaaatccatcaacttatgatattctatttatcaa
atatcgcaactttacagctatgctaatacccatgatttttatacatatgatttggtggtc
tattgcatttcgatatgatttatttcaatattactccgagttttggcatatgccagttgt
aatgatacttggctcaacgattggtggaatgacgtcagaaggagccggtgcggtggcatt
tcctgttatgacattgggactacatattgatccagatattgcaagagattttgcattgat
gatgggtggggtaagcctggtattcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGAAAAAGTCATCAATCCACCT 302 75 105 Antisense
AATCCACCTGAAAATCCATCAACTT 631 167 121 Antisense
CAAATATCGCAACTTTACAGCTATG 368 193 162 Antisense
ACAGCTATGCTAATACCCATGATTT 556 107 178 Antisense
GATTTGGTGGTCTATTGCATTTCGA 591 427 213 Antisense
ATTACTCCGAGTTTTGGCATATGCC 437 13 254 Antisense
GATACTTGGCTCAACGATTGGTGGA 164 423 288 Antisense
GAATGACGTCAGAAGGAGCCGGTGC 267 331 311 Antisense
GAAGGAGCCGGTGCGGTGGCATTTC 68 331 322 Antisense
TGCGGTGGCATTTCCTGTTATGACA 483 581 333 Antisense
TGGGTGGGGTAAGCCTGGTATTCCT 570 491 407 Antisense
Sequence Source Affymetrix Proprietary Database