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[183505_at]

Description M01B2.10 /REP_DB=WormBase Gene ID /WP=CE16271 /TR=O17963 /GB=CAB05567.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 80      6grp_total > 40      4grp_total > 46      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 248.9
(3)
P 		129.4
(-2)
P 		105.7
(-3)
A 		120.3
(-2.4)
P 		143
B 231.5
(3)
P 		165.3
(0.1)
A 		93.8
(-3)
A 		103.2
(-2.6)
P 		138
C 262.5
(3)
P 		125.7
(-2.3)
A 		106.8
(-3)
P 		120.2
(-2.5)
P 		156
avr 247.6
(3) 		140.1
(-1.4) 		102.1
(-3) 		114.6
(-2.5) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 215.1
(1.6)
P 		220.6
(1.9)
P 		242.3
(3)
P 		229.2
(2.3)
P 		178.9
(-0.3)
P 		127.7
(-3)
P 		115
B 221.2
(-0)
P 		266.4
(1.6)
P 		305.1
(3)
P 		252.8
(1.1)
P 		155.6
(-2.4)
P 		137.7
(-3)
P 		167
C 164.2
(-1.8)
P 		260.2
(1.7)
P 		216.8
(0.1)
P 		294.9
(3)
P 		132.4
(-3)
P 		188.3
(-0.9)
P 		163
avr 200.2
(-0.3) 		249.1
(2.4) 		254.7
(2.8) 		259
(3) 		155.6
(-2.8) 		151.2
(-3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 90.6
(3)
P 		28.1
(-2.1)
P 		27.6
(-2.2)
A 		17.6
(-3)
P 		73
B 73.8
(3)
P 		40.8
(-0.8)
A 		21.7
(-3)
A 		22
(-3)
P 		52
C 86.9
(3)
P 		36.1
(-1.6)
A 		37.2
(-1.5)
P 		20.3
(-3)
P 		67
avr 83.8
(3) 		35
(-1.6) 		28.8
(-2.2) 		20
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 39.6
(-1.9)
P 		78.5
(3)
P 		52.8
(-0.3)
P 		58.1
(0.4)
P 		54
(-0.1)
P 		31.1
(-3)
P 		47
B 77
(1.1)
P 		88.7
(3)
P 		74.1
(0.7)
P 		67
(-0.5)
P 		63.2
(-1.1)
P 		51.3
(-3)
P 		37
C 60.9
(-0)
P 		79.4
(3)
P 		55.2
(-1)
P 		59.3
(-0.3)
P 		42.9
(-3)
P 		63
(0.3)
P 		37
avr 59.2
(-1.1) 		82.2
(3) 		60.7
(-0.8) 		61.5
(-0.7) 		53.4
(-2.1) 		48.5
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183505_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13127
Sequence Type Exemplar sequence
Representative Public ID M01B2.10 NCBI
Target Description M01B2.10 /REP_DB=WormBase Gene ID /WP=CE16271 /TR=O17963 /GB=CAB05567.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074378 NCBI Caenorhabditis elegans M01B2.10 (M01B2.10) mRNA, complete cds. 11/11 None
SNAP00000027841 ENSEMBL cdna:SNAP chromosome:CEL140:V:15263570:15264809:-1 11/11 None
GENEFINDER00000027849 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15263570:15266620:-1 11/11 None
M01B2.10 ENSEMBL cdna:known chromosome:CEL140:V:15263570:15265052:-1 gene:M01B2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15263569-15265052(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01B2.10
Entrez Gene 187361 Entrez gene
SwissProt O17963 EMBL-EBI
WormBase CE16271 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587396_AT similar to phytanoyl-CoA hydroxylase interacting protein-like cfa
CANINE_2:CFA.10925.1.S1_AT similar to phytanoyl-CoA hydroxylase interacting protein-like cfa
CANINE_2:CFA.17255.1.S1_S_AT similar to phytanoyl-CoA hydroxylase interacting protein-like cfa
CANINE_2:CFAAFFX.19244.1.S1_S_AT similar to phytanoyl-CoA hydroxylase interacting protein-like cfa
CHICKEN:GGAAFFX.1200.1.S1_AT similar to phytanoyl-CoA hydroxylase interacting protein-like; Em:AC025038.1 gga
HU35KSUBA:RC_AA165369_AT phytanoyl-CoA hydroxylase interacting protein-like hs
HU35KSUBB:RC_AA058844_AT phytanoyl-CoA hydroxylase interacting protein-like hs
HU35KSUBB:RC_R63230_AT phytanoyl-CoA hydroxylase interacting protein-like hs
HU35KSUBC:RC_N34301_AT phytanoyl-CoA hydroxylase interacting protein-like hs
HU35KSUBC:RC_H00919_AT phytanoyl-CoA hydroxylase interacting protein-like hs
U133_X3P:HS.82932.2.A1_3P_AT phytanoyl-CoA hydroxylase interacting protein-like hs
HG-U133_PLUS_2:226623_AT phytanoyl-CoA hydroxylase interacting protein-like hs
HG-U133B:226623_AT phytanoyl-CoA hydroxylase interacting protein-like hs
HG-U95B:43221_AT phytanoyl-CoA hydroxylase interacting protein-like hs
HG-U95B:46196_AT phytanoyl-CoA hydroxylase interacting protein-like hs
HG-U95C:63835_R_AT phytanoyl-CoA hydroxylase interacting protein-like hs
HU35KSUBC:RC_T16794_AT Phytanoyl-CoA hydroxylase interacting protein-like hs
HU35KSUBD:RC_AA481729_AT Phytanoyl-CoA hydroxylase interacting protein-like hs
MG-U74BV2:162521_I_AT phytanoyl-CoA hydroxylase interacting protein-like mm
MOE430A:1427023_AT phytanoyl-CoA hydroxylase interacting protein-like mm
MOUSE430A_2:1427023_AT phytanoyl-CoA hydroxylase interacting protein-like mm
MOUSE430_2:1427023_AT phytanoyl-CoA hydroxylase interacting protein-like mm
MOE430A:1437062_S_AT phytanoyl-CoA hydroxylase interacting protein-like mm
MOUSE430A_2:1437062_S_AT phytanoyl-CoA hydroxylase interacting protein-like mm
MOUSE430_2:1437062_S_AT phytanoyl-CoA hydroxylase interacting protein-like mm
RG-U34B:RC_AA997651_AT phytanoyl-CoA hydroxylase interacting protein-like (predicted) rn
RG-U34C:RC_AI180306_AT phytanoyl-CoA hydroxylase interacting protein-like (predicted) rn
RG-U34B:RC_AI070088_AT Phytanoyl-CoA hydroxylase interacting protein-like (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB05567 Hypothetical protein M01B2.10 [Caenorhabditis elegans] ref|NP_506779.1| M01B2.10 [Caenorhabditis elegans] 0.0
blast AAK09079 Hypothetical protein Y92H12BR.7 [Caenorhabditis elegans] 2.0E-91
blast AAK09079 Hypothetical protein Y92H12BR.7 [Caenorhabditis elegans] 3.0E-91
blast AAK09079 Hypothetical protein Y92H12BR.7 [Caenorhabditis elegans] 4.0E-91
blast CAE69080 Hypothetical protein CBG15098 [Caenorhabditis briggsae] 5.0E-87
blast CAE69080 Hypothetical protein CBG15098 [Caenorhabditis briggsae] 7.0E-87
Sequence
Target Sequence 
>C. ELEGANS:183505_AT
ggccagccaggaaatctcatcaatcgaaaattgcacgggctgttcttctcggcacgtctt
acatccggatcgttacccagctcttccccatttggaaatattcgaatggatgttgactgc
aatctgattctgaatccattcaagcattccttctattttgcggatttctattgcaataag
gcatatcactacgcaacaattgtgatatgtgagattggatctacctcctataaatattgc
aacgaaaagctcattaagcttgacccattttcaaatcctttcataaaactggtaccgaca
gccattcctggtcaatggctttacttcaataatcggacggtatgggtggaactcttctac
acggaaaatgtacacttggattttggacgtttcacgagtattattgcgactggagcgggc
acgtcaaggatcaatgggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCAGCCAGGAAATCTCATCAATC 573 543 715 Antisense
GAAAATTGCACGGGCTGTTCTTCTC 567 353 740 Antisense
CACGTCTTACATCCGGATCGTTACC 676 197 767 Antisense
AATCCATTCAAGCATTCCTTCTATT 289 167 847 Antisense
TAAGGCATATCACTACGCAACAATT 103 637 891 Antisense
GCTTGACCCATTTTCAAATCCTTTC 271 303 972 Antisense
AAAACTGGTACCGACAGCCATTCCT 36 131 999 Antisense
ATTCCTGGTCAATGGCTTTACTTCA 685 5 1018 Antisense
GGACGGTATGGGTGGAACTCTTCTA 91 523 1049 Antisense
TATTGCGACTGGAGCGGGCACGTCA 359 665 1116 Antisense
GCGGGCACGTCAAGGATCAATGGGC 299 293 1129 Antisense
Sequence Source Affymetrix Proprietary Database