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[183504_at]

Description F55G11.3 /REP_DB=WormBase Gene ID /WP=CE18749 /TR=Q9XUD7 /GB=CAB05219.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 16.8
(-1.3)
A 		40.3
(3)
A 		8.4
(-2.9)
A 		7.8
(-3)
A 		33
B 31.3
(-0.1)
A 		53
(3)
A 		11.5
(-3)
A 		48
(2.3)
A 		42
C 4
(-3)
A 		93.7
(3)
A 		35
(-0.9)
A 		5.7
(-2.9)
A 		90
avr 17.4
(-3) 		62.3
(3) 		18.3
(-2.9) 		20.5
(-2.6) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 6.3
(-2.5)
A 		8.5
(-2.3)
A 		12.6
(-1.8)
A 		2.2
(-3)
A 		54.2
(3)
A 		4.9
(-2.7)
A 		52
B 8.7
(-2.1)
A 		25.1
(0.3)
A 		2.7
(-3)
A 		43.8
(3)
A 		5.7
(-2.6)
A 		5.8
(-2.5)
A 		41
C 55.7
(3)
A 		40.7
(1.1)
A 		8.2
(-3)
A 		22.8
(-1.2)
A 		27
(-0.6)
A 		31.3
(-0.1)
A 		48
avr 23.6
(1.5) 		24.8
(1.8) 		7.8
(-3) 		22.9
(1.3) 		29
(3) 		14
(-1.2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 6.1
(0.9)
A 		8.8
(3)
A 		2.2
(-2.1)
A 		1.1
(-3)
A 		8
B 10
(1.2)
A 		13.1
(3)
A 		2.7
(-3)
A 		10.2
(1.3)
A 		10
C 1.3
(-2.9)
A 		26.9
(3)
A 		12.2
(-0.4)
A 		1
(-3)
A 		26
avr 5.8
(-2.2) 		16.3
(3) 		5.7
(-2.2) 		4.1
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.2
(-2.8)
A 		3
(-2.1)
A 		2.7
(-2.2)
A 		0.6
(-3)
A 		16.4
(3)
A 		1.2
(-2.8)
A 		16
B 3
(-1.7)
A 		8.4
(1.2)
A 		0.7
(-3)
A 		11.6
(3)
A 		2.3
(-2.1)
A 		2.2
(-2.2)
A 		11
C 20.6
(3)
A 		12.4
(0.3)
A 		2.1
(-3)
A 		4.6
(-2.2)
A 		8.7
(-0.9)
A 		10.5
(-0.3)
A 		19
avr 8.3
(2.3) 		7.9
(2) 		1.8
(-3) 		5.6
(0.1) 		9.1
(3) 		4.6
(-0.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183504_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8582
Sequence Type Exemplar sequence
Representative Public ID F55G11.3 NCBI
Target Description F55G11.3 /REP_DB=WormBase Gene ID /WP=CE18749 /TR=Q9XUD7 /GB=CAB05219.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000016145 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12970244:12971238:-1 9/11 None
GENEFINDER00000016154 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12967452:12971944:-1 10/11 None
F55G11.3 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:12970242:12971944:-1 gene:F55G11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12970249-12971950(-) 100.0 100.0
Public Domain and Genome References
Ensembl F55G11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05218 Hypothetical protein F55G11.2 [Caenorhabditis elegans] ref|NP_502483.1| F55G11.2 [Caenorhabditis elegans] 0.0
blast CAB03527 Hypothetical protein F55G11.4 [Caenorhabditis elegans] emb|CAB05224.1| Hypothetical protein F55G11.4 [Caenorhabditis elegans] ref|NP_502485.1| F55G11.4 [Caenorhabditis elegans] 1.0E-141
blast T22745 hypothetical protein F55G11.3 - Caenorhabditis elegans 1.0E-137
blast T22745 hypothetical protein F55G11.3 - Caenorhabditis elegans 1.0E-73
blast CAB03527 Hypothetical protein F55G11.4 [Caenorhabditis elegans] emb|CAB05224.1| Hypothetical protein F55G11.4 [Caenorhabditis elegans] ref|NP_502485.1| F55G11.4 [Caenorhabditis elegans] 5.0E-45
blast CAB05220 Hypothetical protein F55G11.8 [Caenorhabditis elegans] ref|NP_502481.1| F55G11.8 [Caenorhabditis elegans] 1.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.1E-7
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 5.7E-46
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.4E-50
Sequence
Target Sequence 
>C. ELEGANS:183504_AT
aaggatttgctacgcttgcattcaaagttgtttggtggccacttccaccatcaaaatatg
ttcatcttgttggacctactggtcaggtggtcaacgtcacagaaactatttttgctatgc
aatacgagggaccaggcggactcactctgttgacattcccaggagatttgaaaaactatt
attcattgagaagcgcattggtctttgaaggaaacaatttggacacggcaaactatgttt
caaatctctacctgctataccagaaaaaagtgcaatggtcaactagtcaagagattctgg
ctggaattgatgagatagttgaacttcacccgcaatctatgtctgatcttgaattgcaaa
tgatcgatgctcagatggaagatgactctaccgtttcagtttactatggttctccagaaa
tcttcgctctcgataaaacttacaccaaaggacagctggagaacgcacttccattgtcgt
ttaatggatcttttgtgcagtttgtggtcagttcagctgtgagccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGATTTGCTACGCTTGCATTCAA 35 161 371 Antisense
GTTCATCTTGTTGGACCTACTGGTC 24 445 430 Antisense
ACTGGTCAGGTGGTCAACGTCACAG 467 97 448 Antisense
AATACGAGGGACCAGGCGGACTCAC 95 163 491 Antisense
CTCACTCTGTTGACATTCCCAGGAG 260 229 511 Antisense
ATGTTTCAAATCTCTACCTGCTATA 235 47 605 Antisense
TTCACCCGCAATCTATGTCTGATCT 687 685 695 Antisense
GATGACTCTACCGTTTCAGTTTACT 514 409 751 Antisense
ATGGTTCTCCAGAAATCTTCGCTCT 198 51 776 Antisense
GGAGAACGCACTTCCATTGTCGTTT 575 517 828 Antisense
TGTGGTCAGTTCAGCTGTGAGCCGT 94 555 873 Antisense
Sequence Source Affymetrix Proprietary Database