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[183503_at]

Description R05A10.5 /REP_DB=WormBase Gene ID /WP=CE16291 /TR=O45702 /GB=CAB05266.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 16      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 38.3
(0.4)
A 		6.7
(-3)
A 		15.9
(-2)
A 		62.4
(3)
A 		56
B 13.6
(-3)
A 		75.3
(3)
A 		51
(0.6)
A 		71.5
(2.6)
A 		62
C 6.9
(-3)
A 		20.8
(-2.5)
A 		65.2
(-0.9)
A 		171.1
(3)
A 		164
avr 19.6
(-3) 		34.3
(-1.9) 		44
(-1.2) 		101.7
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 59.4
(3)
A 		14.7
(-2.9)
A 		54.4
(2.3)
A 		13.7
(-3)
A 		20.6
(-2.1)
A 		31
(-0.7)
A 		46
B 27.3
(-1)
A 		59
(3)
A 		44.2
(1.1)
A 		32.4
(-0.4)
A 		12.4
(-2.9)
A 		11.4
(-3)
A 		48
C 48
(1.3)
A 		64.1
(3)
A 		8.3
(-3)
A 		43.8
(0.8)
A 		10.7
(-2.7)
A 		34.7
(-0.2)
A 		56
avr 44.9
(2.8) 		45.9
(3) 		35.6
(1) 		30
(-0) 		14.6
(-3) 		25.7
(-0.9) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 13.9
(3)
A 		1.5
(-3)
A 		4.2
(-1.7)
A 		9.1
(0.7)
A 		12
B 4.3
(-3)
A 		18.6
(3)
A 		11.8
(0.1)
A 		15.2
(1.6)
A 		14
C 2.3
(-3)
A 		6
(-2.2)
A 		22.7
(1.6)
A 		28.8
(3)
A 		27
avr 6.8
(-3) 		8.7
(-2) 		12.9
(0.4) 		17.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.9
(2.3)
A 		5.2
(-1.8)
A 		11.8
(3)
A 		3.5
(-3)
A 		6.2
(-1)
A 		7.6
(-0)
A 		8
B 9.5
(-0.9)
A 		19.6
(3)
A 		10.7
(-0.5)
A 		8.6
(-1.3)
A 		5
(-2.7)
A 		4.2
(-3)
A 		15
C 17.8
(2.4)
A 		19.6
(3)
A 		2.1
(-3)
A 		8.8
(-0.7)
A 		3.5
(-2.5)
A 		11.6
(0.3)
A 		18
avr 12.7
(1.7) 		14.8
(3) 		8.2
(-1) 		7
(-1.7) 		4.9
(-3) 		7.8
(-1.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183503_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10053
Sequence Type Exemplar sequence
Representative Public ID R05A10.5 NCBI
Target Description R05A10.5 /REP_DB=WormBase Gene ID /WP=CE16291 /TR=O45702 /GB=CAB05266.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070316 NCBI Caenorhabditis elegans R05A10.5 (R05A10.5) mRNA, complete cds. 11/11 None
SNAP00000012475 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14168875:14170805:1 11/11 None
GENEFINDER00000012482 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14165765:14173077:1 11/11 None
R05A10.5 ENSEMBL cdna:known chromosome:CEL140:IV:14168875:14170805:1 gene:R05A10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14168880-14170811(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05A10.5
Entrez Gene 187596 Entrez gene
SwissProt O45702 EMBL-EBI
WormBase CE16291 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05266 Hypothetical protein R05A10.5 [Caenorhabditis elegans] ref|NP_502717.1| R05A10.5 [Caenorhabditis elegans] 0.0
blast CAB05267 Hypothetical protein R05A10.6 [Caenorhabditis elegans] ref|NP_502716.2| R05A10.6 [Caenorhabditis elegans] 0.0
blast CAB05266 Hypothetical protein R05A10.5 [Caenorhabditis elegans] ref|NP_502717.1| R05A10.5 [Caenorhabditis elegans] 1.0E-167
blast CAB54373 Hypothetical protein Y105C5B.25 [Caenorhabditis elegans] ref|NP_502914.1| Y105C5B.25 [Caenorhabditis elegans] 1.0E-129
blast CAE72666 Hypothetical protein CBG19881 [Caenorhabditis briggsae] 4.0E-56
blast NP_001023100 C55C3.7 [Caenorhabditis elegans] gb|AAU87823.1| Hypothetical protein C55C3.7 [Caenorhabditis elegans] 3.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.4E-109
Pfam IPR009981 EMBL-EBI Protein of unknown function DUF1505 2.4E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000012482 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:183503_AT
ctgtccaccgtatgttccaatggttttgaatagcacttttatgtgtggaccattaccaaa
atctatgagagaagaaacgacaaattgttgtcctgctggaggactttggtcggattatac
aggatatcagaggatcaatggacaatggactaggactagaaaatgtttgtctgataaggc
gggatgtccgtgtagcggcgatgttactgatgcttcagctcaatgcccatgctctcagcc
atcagacgctacaagtatctgtacatcagttccaagtgctcaaccatcccgattccaagc
gttaactattgatcatgctacatgtacggcaaagtttgatatggttggaattaattcggg
cggtattcggtactgtcagagacttgacacctactatcgtccttatgtattcgtagcact
tcttctcatgaaagaagtttctggtgaatgtacaatcgattatgtatttgattgtatgaa
tcaagaacgaccggattcccatatggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTCCACCGTATGTTCCAATGGTT 591 239 294 Antisense
TCCTGCTGGAGGACTTTGGTCGGAT 540 593 384 Antisense
CGGGATGTCCGTGTAGCGGCGATGT 290 245 473 Antisense
GCGGCGATGTTACTGATGCTTCAGC 438 293 488 Antisense
CTCTCAGCCATCAGACGCTACAAGT 230 231 525 Antisense
GTACATCAGTTCCAAGTGCTCAACC 210 461 554 Antisense
CCATCCCGATTCCAAGCGTTAACTA 686 271 577 Antisense
TCGGGCGGTATTCGGTACTGTCAGA 266 605 649 Antisense
ACTTGACACCTACTATCGTCCTTAT 54 103 675 Antisense
GTCCTTATGTATTCGTAGCACTTCT 149 477 692 Antisense
GAACGACCGGATTCCCATATGGATG 326 347 778 Antisense
Sequence Source Affymetrix Proprietary Database