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[183502_at]

Description Y39B6B.D /REP_DB=WormBase Gene ID /WP=CE21675 /TR=Q9NEV5 /GB=CAB60909.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 14      4grp_high_8_8 > 20      6grp_total > 14      4grp_total > 20      6grp_cgc > 41      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 212.5
(0.3)
P 		223.8
(0.7)
P 		120.9
(-3)
P 		285.6
(3)
P 		165
B 154.8
(-0.2)
P 		122.7
(-1.1)
A 		55.3
(-3)
A 		271.5
(3)
P 		216
C 257.8
(1.3)
P 		150.3
(-1.7)
P 		104.4
(-3)
A 		319.8
(3)
P 		215
avr 208.4
(0.5) 		165.6
(-0.8) 		93.5
(-3) 		292.3
(3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 262.5
(3)
P 		160
(-0.9)
P 		155.6
(-1.1)
P 		139.6
(-1.7)
P 		184.2
(0)
P 		105.4
(-3)
P 		157
B 219.6
(2.5)
P 		227
(3)
P 		148.4
(-2)
P 		173.3
(-0.4)
P 		157.5
(-1.4)
P 		132.7
(-3)
A 		94
C 137.6
(-0.4)
P 		203.7
(3)
P 		154
(0.4)
P 		176.9
(1.6)
P 		87.7
(-3)
A 		141.5
(-0.2)
A 		116
avr 206.6
(3) 		196.9
(2.3) 		152.7
(-1) 		163.3
(-0.2) 		143.1
(-1.8) 		126.5
(-3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 77.4
(3)
P 		48.6
(-0.8)
P 		31.6
(-3)
P 		41.8
(-1.7)
P 		46
B 49.4
(1.9)
P 		30.3
(-0.7)
A 		12.8
(-3)
A 		57.9
(3)
P 		45
C 85.4
(3)
P 		43.2
(-2.2)
P 		36.4
(-3)
A 		53.9
(-0.9)
P 		49
avr 70.7
(3) 		40.7
(-1.1) 		26.9
(-3) 		51.2
(0.3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 48.4
(1.4)
P 		56.9
(3)
P 		33.9
(-1.4)
P 		35.4
(-1.1)
P 		55.6
(2.8)
P 		25.7
(-3)
P 		31
B 76.4
(3)
P 		75.6
(2.9)
P 		36
(-3)
P 		45.9
(-1.5)
P 		64
(1.2)
P 		49.5
(-1)
A 		40
C 51
(1)
P 		62.1
(3)
P 		39.2
(-1.1)
P 		35.6
(-1.7)
P 		28.4
(-3)
A 		47.4
(0.4)
A 		34
avr 58.6
(1.7) 		64.9
(3) 		36.4
(-3) 		39
(-2.5) 		49.3
(-0.3) 		40.9
(-2.1) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183502_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19429
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.D NCBI
Target Description Y39B6B.D /REP_DB=WormBase Gene ID /WP=CE21675 /TR=Q9NEV5 /GB=CAB60909.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029058(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029058 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-95) (nhr-95) mRNA, complete cds. 10/11 None
GENEFINDER00000030714 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19079241:19085141:-1 11/11 None
Y39B6A.17a ENSEMBL cdna:known chromosome:CEL140:V:19079163:19085141:-1 gene:Y39B6A.17 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029059 3/11 Cross Hyb Matching Probes None
Y39B6A.17b 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180254 2 1 NM_001029058 183502_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19079240-19085141(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y39B6A.17
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD31815 Hypothetical protein Y39B6A.17a [Caenorhabditis elegans] ref|NP_001024229.1| Nuclear Hormone Receptor family member (nhr-95) [Caenorhabditis elegans] 0.0
blast AAG15186 nuclear receptor NHR-95 [Caenorhabditis elegans] 0.0
blast CAD91709 Hypothetical protein Y39B6A.17b [Caenorhabditis elegans] ref|NP_001024230.1| Nuclear Hormone Receptor family member (nhr-95) [Caenorhabditis elegans] 0.0
blast T45030 hypothetical protein Y39B6B.d [imported] - Caenorhabditis elegans 0.0
blast CAD31815 Hypothetical protein Y39B6A.17a [Caenorhabditis elegans] ref|NP_001024229.1| Nuclear Hormone Receptor family member (nhr-95) [Caenorhabditis elegans] 1.0E-165
blast CAD91709 Hypothetical protein Y39B6A.17b [Caenorhabditis elegans] ref|NP_001024230.1| Nuclear Hormone Receptor family member (nhr-95) [Caenorhabditis elegans] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.1E-4
Sequence
Target Sequence 
>C. ELEGANS:183502_AT
aaaaccgatgttgtgcttcagggcgacatcgttgtggacgtagaacatgtatatatggat
accaggtggctgagcaattttccgctggagcagtttagaagactaaaaatgagcaaaaat
acggagggatcgagaaatgcgccaaggcaccgaaaatgcgtcagcgcacgaaaaaaaatc
ctatgccaaaagcttgcccaacaactcccgggccccaaattctatatcacgccagttcaa
aaatcgacgaaattccaaaattttcaataccgaatttttatcgacaagccatatgacgaa
cttttagagaaatatgttctcaacctccatccgaacgatcacagaaaactggagaaaaac
ctagcagactttcgaaaatttcacatggaaaatgtggttccccagcgatttctggcggat
ttctattttcaaggaacttttgaaaatgaagaaaagcttcacaatttgacaatggaaatt
ttgaaaaaatatcgaaaaattgattgtcttgaagaagatgaagccgtccaaattcacatg
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACCGATGTTGTGCTTCAGGGCG 417 131 673 Antisense
GCTTCAGGGCGACATCGTTGTGGAC 503 305 687 Antisense
GGCTGAGCAATTTTCCGCTGGAGCA 630 539 740 Antisense
AGGCACCGAAAATGCGTCAGCGCAC 207 55 817 Antisense
TCCTATGCCAAAAGCTTGCCCAACA 685 591 851 Antisense
CGGGCCCCAAATTCTATATCACGCC 181 243 881 Antisense
AGAAATATGTTCTCAACCTCCATCC 249 73 980 Antisense
CCTCCATCCGAACGATCACAGAAAA 457 267 996 Antisense
TGGAAAATGTGGTTCCCCAGCGATT 211 547 1058 Antisense
CAGCGATTTCTGGCGGATTTCTATT 286 203 1075 Antisense
GATGAAGCCGTCCAAATTCACATGG 40 413 1189 Antisense
Sequence Source Affymetrix Proprietary Database