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[183501_at]

Description B0047.1 /REP_DB=WormBase Gene ID /WP=CE07673 /TR=O16564 /GB=AAB66041.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 2.9
(-3)
A 		7.6
(-0.3)
A 		10.7
(1.5)
A 		13.3
(3)
A 		10
B 1
(-3)
A 		2.2
(-2.7)
A 		3.6
(-2.4)
A 		29.1
(3)
A 		28
C 3.8
(-2.9)
A 		27.2
(-1.4)
A 		1.6
(-3)
A 		95.8
(3)
P 		94
avr 2.6
(-3) 		12.3
(-1.7) 		5.3
(-2.6) 		46.1
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 22.5
(3)
A 		3.1
(-2.8)
A 		4.4
(-2.5)
A 		2.9
(-2.9)
A 		2.6
(-3)
A 		4
(-2.6)
A 		20
B 9.2
(-1.3)
A 		1
(-3)
A 		10.2
(-1.1)
A 		29.8
(3)
A 		2.9
(-2.6)
A 		9.7
(-1.2)
A 		29
C 11.8
(-0.2)
A 		4.4
(-2.7)
A 		3.5
(-3)
A 		5.9
(-2.2)
A 		21.2
(3)
A 		18.5
(2.1)
A 		18
avr 14.5
(3) 		2.8
(-3) 		6
(-1.4) 		12.9
(2.2) 		8.9
(0.1) 		10.7
(1.1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1
(-3)
A 		1.6
(-1)
A 		2.8
(3)
A 		1.9
(0)
A 		2
B 0.3
(-3)
A 		0.5
(-2.8)
A 		0.8
(-2.5)
A 		6.2
(3)
A 		6
C 1.3
(-2.7)
A 		7.8
(-0.2)
A 		0.6
(-3)
A 		16.2
(3)
P 		16
avr 0.9
(-3) 		3.3
(-1) 		1.4
(-2.6) 		8.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.1
(3)
A 		1.1
(-2.3)
A 		1
(-2.5)
A 		0.7
(-3)
A 		0.8
(-2.8)
A 		1
(-2.5)
A 		3
B 3.2
(-0.7)
A 		0.3
(-3)
A 		2.5
(-1.3)
A 		7.9
(3)
A 		1.2
(-2.3)
A 		3.6
(-0.4)
A 		8
C 4.4
(0.5)
A 		1.3
(-2.6)
A 		0.9
(-3)
A 		1.2
(-2.7)
A 		6.9
(3)
A 		6.2
(2.3)
A 		6
avr 3.9
(3) 		0.9
(-3) 		1.5
(-1.8) 		3.3
(1.8) 		3
(1.2) 		3.6
(2.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5632
Sequence Type Exemplar sequence
Representative Public ID B0047.1 NCBI
Target Description B0047.1 /REP_DB=WormBase Gene ID /WP=CE07673 /TR=O16564 /GB=AAB66041.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061760(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061760 NCBI Caenorhabditis elegans B0047.1 (B0047.1) mRNA, complete cds. 11/11 None
B0047.1 ENSEMBL cdna:known chromosome:CEL140:II:2040396:2041616:-1 gene:B0047.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006975 8/11 Cross Hyb Matching Probes None
GENEFINDER00000006984 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2040367-2041615(-) 94.7 100.0
Public Domain and Genome References
Ensembl B0047.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66041 Hypothetical protein B0047.1a [Caenorhabditis elegans] ref|NP_494161.2| B0047.1 [Caenorhabditis elegans] 1.0E-155
blast ABA03120 Hypothetical protein B0047.1b [Caenorhabditis elegans] 1.0E-153
blast AAB71059 Hypothetical protein R52.1 [Caenorhabditis elegans] ref|NP_494192.1| R52.1 [Caenorhabditis elegans] 3.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.1E-39
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.5E-30
Sequence
Target Sequence 
>C. ELEGANS:183501_AT
gcattaccattgaagtggctgccaaaatcacgaagatgtctggagtgattgaaaatctgc
acagattctttgataaatcaatgaaacaattctccgatgtggttattgacgtgaaaggaa
caaagttctatgtcctcagaaagctgctcgccttccactcaacttatttctacacccttc
tcggggattctactgaatcgaaagtcacaatctctgacatcaacgcagatgattttcaga
cacttcttgaggttctctacggagaatctgcgattaatgacagtaatgtcgatggattac
tccaatttgctctcaagcatgagattctgctcgcaatccagaaatgcatcgagtttctca
gcgaaaaatccgaaaaaccaatgaaggatcgagtcaaaatcgcgaagcagcacaaactgt
acaatttgaaggtacactgcctggtggtgatccctctgggctgtaatttaagccacgccc
tactcatgaaaatcaagacaacggatgaaatcaaagcggcattgtcagaagatctgttgg
aaatggacactaccgtggtggcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTACCATTGAAGTGGCTGCCAA 577 307 380 Antisense
AATTCTCCGATGTGGTTATTGACGT 43 173 467 Antisense
AGTTCTATGTCCTCAGAAAGCTGCT 517 63 503 Antisense
CCCTTCTCGGGGATTCTACTGAATC 175 257 554 Antisense
GTCACAATCTCTGACATCAACGCAG 376 465 583 Antisense
GACACTTCTTGAGGTTCTCTACGGA 276 367 618 Antisense
GGATTACTCCAATTTGCTCTCAAGC 592 509 673 Antisense
GAAATGCATCGAGTTTCTCAGCGAA 28 363 720 Antisense
CCACGCCCTACTCATGAAAATCAAG 685 273 852 Antisense
AAAGCGGCATTGTCAGAAGATCTGT 185 125 892 Antisense
AAATGGACACTACCGTGGTGGCGGC 279 119 920 Antisense
Sequence Source Affymetrix Proprietary Database