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[183500_at]

Description D2024.1 /REP_DB=WormBase Gene ID /WP=CE04290 /TR=Q18976 /GB=AAA82292.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 4.9
(3)
A 		2.5
(-2)
A 		3.1
(-0.7)
A 		2
(-3)
A 		3
B 7.2
(0.5)
A 		10.9
(3)
A 		3.1
(-2.2)
A 		1.9
(-3)
A 		9
C 2.4
(-2.9)
A 		1.5
(-3)
A 		1.9
(-3)
A 		63.7
(3)
A 		62
avr 4.8
(-2.4) 		5
(-2.3) 		2.7
(-3) 		22.5
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 2.7
(-2.5)
A 		1.9
(-2.8)
A 		11.6
(0.7)
A 		1.3
(-3)
A 		11.8
(0.7)
A 		18.2
(3)
A 		17
B 1
(-3)
A 		2.2
(-2.6)
A 		1.9
(-2.7)
A 		17.6
(3)
A 		9.5
(0.1)
A 		10.6
(0.5)
A 		17
C 1.1
(-3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		4.3
(-2.7)
A 		4.8
(-2.6)
A 		60
(3)
A 		59
avr 1.6
(-3) 		1.8
(-3) 		4.9
(-2.3) 		7.7
(-1.7) 		8.7
(-1.5) 		29.6
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.8
(3)
A 		0.5
(-2.2)
A 		0.8
(-1)
A 		0.3
(-3)
A 		2
B 2.3
(2)
A 		2.7
(3)
A 		0.7
(-2.2)
A 		0.4
(-3)
A 		2
C 0.8
(-2.8)
A 		0.4
(-3)
A 		0.7
(-2.8)
A 		10.7
(3)
A 		10
avr 1.6
(-1.3) 		1.2
(-2) 		0.7
(-3) 		3.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.5
(-2.7)
A 		0.7
(-2.4)
A 		2.5
(0.2)
A 		0.3
(-3)
A 		3.6
(1.8)
A 		4.4
(3)
A 		4
B 0.4
(-3)
A 		0.7
(-2.6)
A 		0.5
(-2.9)
A 		4.7
(3)
A 		3.9
(1.9)
A 		3.9
(1.9)
A 		4
C 0.4
(-3)
A 		0.4
(-3)
A 		0.3
(-3)
A 		0.9
(-2.8)
A 		1.6
(-2.6)
A 		20.1
(3)
A 		20
avr 0.4
(-3) 		0.6
(-2.9) 		1.1
(-2.5) 		2
(-1.9) 		3
(-1.3) 		9.5
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10265
Sequence Type Exemplar sequence
Representative Public ID D2024.1 NCBI
Target Description D2024.1 /REP_DB=WormBase Gene ID /WP=CE04290 /TR=Q18976 /GB=AAA82292.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068750(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068750 NCBI Caenorhabditis elegans D2024.1 (D2024.1) mRNA, complete cds. 11/11 None
SNAP00000033330 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7248256:7249267:1 9/11 None
GENEFINDER00000033335 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7247527:7249698:1 9/11 None
D2024.1 ENSEMBL cdna:known chromosome:CEL140:IV:7247527:7249421:1 gene:D2024.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7247532-7249427(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2024.1
Entrez Gene 183947 Entrez gene
SwissProt Q18976 EMBL-EBI
WormBase CE04290 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_501151 D2024.1 [Caenorhabditis elegans] gb|AAA82292.1| Hypothetical protein D2024.1 [Caenorhabditis elegans] 0.0
blast CAA92725 Hypothetical protein C05C12.1 [Caenorhabditis elegans] ref|NP_502112.1| C05C12.1 [Caenorhabditis elegans] 1.0E-168
blast CAA92725 Hypothetical protein C05C12.1 [Caenorhabditis elegans] ref|NP_502112.1| C05C12.1 [Caenorhabditis elegans] 1.0E-167
blast NP_501151 D2024.1 [Caenorhabditis elegans] gb|AAA82292.1| Hypothetical protein D2024.1 [Caenorhabditis elegans] 1.0E-162
blast CAA92725 Hypothetical protein C05C12.1 [Caenorhabditis elegans] ref|NP_502112.1| C05C12.1 [Caenorhabditis elegans] 1.0E-141
blast CAE67306 Hypothetical protein CBG12760 [Caenorhabditis briggsae] 6.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.1E-8
Pfam IPR000719 EMBL-EBI Protein kinase 7.0E-7
Pfam IPR000719 EMBL-EBI Protein kinase 7.0E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033335 1 336-358
Sequence
Target Sequence 
>C. ELEGANS:183500_AT
tgaagttctcacatcccgagtgttctacctcatcgatttcggaatttccagcaaattcat
ccgccacatcaaagggactcctataaatcaacaaaatggctttgaatttcgaacggaaaa
caagaaagttcactcactggttggaacaccgaagtacacatcacccaaagctcatgcaat
ggctgatttgggaagaggtgatgatttctggtctctcatgtatatgattgctgaactagt
caaaccattgccatgggagatactcgaagcgaaaatgctggaaaagacgaaattgaagag
taagctcaaggatctttacggcattgatgcttttggaaaaattgaaaccatgctccaagc
ctgcactttccactcatttccgaactatgaaatgatctaccatgcattcaaagacgtgtt
taccaaaagtggagcttcttggtatgatcattcgattgggagggaaaaaatatgccgtct
tacaaacgatggagacagaatgccgagaaaccacgttgattgttcggttgggaagaatct
gacgtcggactttattttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGTTCTCACATCCCGAGTGTTC 490 575 492 Antisense
TCATCCGCCACATCAAAGGGACTCC 668 621 548 Antisense
GCTCATGCAATGGCTGATTTGGGAA 335 301 661 Antisense
GATTTCTGGTCTCTCATGTATATGA 119 429 694 Antisense
GCTGAACTAGTCAAACCATTGCCAT 596 247 721 Antisense
AAGGATCTTTACGGCATTGATGCTT 593 159 799 Antisense
CTTTCCACTCATTTCCGAACTATGA 345 223 857 Antisense
GATCTACCATGCATTCAAAGACGTG 508 419 885 Antisense
GGAGCTTCTTGGTATGATCATTCGA 342 521 922 Antisense
GAATGCCGAGAAACCACGTTGATTG 229 331 989 Antisense
GAATCTGACGTCGGACTTTATTTTC 132 329 1026 Antisense
Sequence Source Affymetrix Proprietary Database