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[183497_at]

Description M03F8.5 /REP_DB=WormBase Gene ID /WP=CE12380 /TR=O16375 /GB=AAB65912.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 02      4grp_high_8_8 > 18      6grp_total > 24      4grp_total > 38      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 101.4
(3)
P 		35.5
(-3)
A 		56.6
(-1.1)
P 		50.4
(-1.6)
A 		66
B 104.9
(3)
P 		83.9
(0.8)
P 		47.3
(-3)
P 		88
(1.2)
P 		58
C 101.4
(3)
P 		60.8
(-0.9)
P 		44.7
(-2.5)
P 		39.1
(-3)
A 		62
avr 102.6
(3) 		60.1
(-1.8) 		49.5
(-3) 		59.2
(-1.9) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 135.8
(3)
P 		76.2
(-0.7)
P 		101.6
(0.9)
P 		58
(-1.8)
P 		38.2
(-3)
M 		42.4
(-2.7)
P 		98
B 78.9
(3)
P 		66
(1.3)
P 		55
(-0.1)
P 		47.6
(-1.1)
P 		33.2
(-3)
P 		39.6
(-2.2)
P 		46
C 60.4
(0.3)
P 		89.3
(3)
P 		83.5
(2.5)
P 		76.3
(1.8)
P 		26
(-3)
P 		61.7
(0.4)
P 		63
avr 91.7
(3) 		77.2
(1.5) 		80
(1.8) 		60.6
(-0.2) 		32.5
(-3) 		47.9
(-1.4) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 36.9
(3)
P 		7.7
(-2.9)
A 		14.8
(-1.5)
P 		7.4
(-3)
A 		30
B 33.5
(3)
P 		20.7
(-0.4)
P 		11
(-3)
P 		18.7
(-0.9)
P 		23
C 33.6
(3)
P 		17.5
(-0.6)
P 		15.6
(-1)
P 		6.6
(-3)
A 		27
avr 34.7
(3) 		15.3
(-1.9) 		13.8
(-2.3) 		10.9
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 25
(2.3)
P 		27.1
(3)
P 		22.1
(1.2)
P 		14.7
(-1.4)
P 		11.5
(-2.6)
M 		10.3
(-3)
P 		17
B 27.5
(3)
P 		22
(0.8)
P 		13.3
(-2.7)
P 		12.6
(-3)
P 		13.5
(-2.6)
P 		14.8
(-2.1)
P 		15
C 22.4
(1.5)
P 		27.2
(3)
P 		21.3
(1.1)
P 		15.3
(-0.8)
P 		8.4
(-3)
P 		20.7
(0.9)
P 		19
avr 25
(2.8) 		25.4
(3) 		18.9
(0.3) 		14.2
(-1.7) 		11.1
(-3) 		15.3
(-1.2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183497_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11949
Sequence Type Exemplar sequence
Representative Public ID M03F8.5 NCBI
Target Description M03F8.5 /REP_DB=WormBase Gene ID /WP=CE12380 /TR=O16375 /GB=AAB65912.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072145
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000043850 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5936020:5939363:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072145 4/11 Cross Hyb Matching Probes None
SNAP00000043836 6/11 Cross Hyb Matching Probes None
SNAP00000043837 1/11 Cross Hyb Matching Probes None
M03F8.5 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5936019-5939363(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504546 M03F8.5 [Caenorhabditis elegans] gb|AAB65912.2| Hypothetical protein M03F8.5 [Caenorhabditis elegans] 0.0
blast CAE64541 Hypothetical protein CBG09284 [Caenorhabditis briggsae] 0.0
blast CAE72136 Hypothetical protein CBG19234 [Caenorhabditis briggsae] 3.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.6E-54
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043850 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:183497_AT
aaacttccgcattttggatttacatttatatcgagaaactttcacttacactcaacgttg
aaatttctcattagcctttccaaaaacttggatagttcgaaaagaagcaagaaccttttt
gaagttcaaccaactaatgctacatgtcaagataatggtgtaatcagtaatcattgtctt
tgtatggttgatgcttctcaagatatccgaaagcttccaaattctgaattactccaagat
gtattgaaatcttatatggatgatttcaaagattgttttgatataactacaatcaaatgt
ggaaacgtgacggaaatgataatgccaaacaattatgtccaagtgtgggctagaacaaaa
atcagtgatagcgaagtaatacgaaaaaaggaaaaaggaagtgctgttatctacccatac
ctcgaatgtcagttagaatccaaaaatggagattctgtagaactgttatcacaatttcgt
ctaattcaagccactcaagaagtaacaattgcctaccctccacgactcaaaaccacttct
ccgagccaatgcgggcattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTTCCGCATTTTGGATTTACAT 562 123 1141 Antisense
AGAAACTTTCACTTACACTCAACGT 363 73 1174 Antisense
GAAATTTCTCATTAGCCTTTCCAAA 586 361 1200 Antisense
GTCTTTGTATGGTTGATGCTTCTCA 420 469 1316 Antisense
GATATCCGAAAGCTTCCAAATTCTG 519 423 1342 Antisense
AAGGAAGTGCTGTTATCTACCCATA 268 161 1535 Antisense
ATCTACCCATACCTCGAATGTCAGT 617 31 1549 Antisense
GAACTGTTATCACAATTTCGTCTAA 105 349 1600 Antisense
ATTTCGTCTAATTCAAGCCACTCAA 624 15 1614 Antisense
CAAGAAGTAACAATTGCCTACCCTC 625 183 1636 Antisense
CTTCTCCGAGCCAATGCGGGCATTT 470 219 1676 Antisense
Sequence Source Affymetrix Proprietary Database