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[183496_at]

Description C26B2.8 /REP_DB=WormBase Gene ID /WP=CE04094 /TR=Q18197 /GB=AAC24260.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 581
1 2 3 4 range
A 4.9
(-3)
A 		545.4
(3)
P 		472.3
(2.2)
P 		5.9
(-3)
A 		541
B 4.4
(-3)
A 		505.7
(2.2)
P 		584.9
(3)
P 		7.8
(-3)
A 		581
C 12.4
(-3)
A 		423.9
(1.6)
P 		550.8
(3)
P 		43.5
(-2.7)
A 		538
avr 7.2
(-3) 		491.7
(2.5) 		536
(3) 		19.1
(-2.9) 		529

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 84
(-3)
A 		249
(0.1)
P 		219
(-0.5)
P 		241.4
(-0.1)
P 		251.1
(0.1)
P 		406.8
(3)
P 		323
B 73.1
(-3)
A 		225.1
(0.3)
P 		197.2
(-0.3)
P 		214.7
(0.1)
P 		227.6
(0.3)
P 		350.8
(3)
P 		278
C 65.4
(-3)
A 		325.8
(2.2)
P 		208.2
(-0.1)
P 		230
(0.3)
P 		244.3
(0.6)
P 		365.1
(3)
P 		300
avr 74.2
(-3) 		266.6
(0.8) 		208.1
(-0.3) 		228.7
(0.1) 		241
(0.3) 		374.2
(3) 		300
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 1.8
(-3)
A 		118.4
(2.8)
P 		123.5
(3)
P 		0.9
(-3)
A 		123
B 1.4
(-3)
A 		124.9
(2.5)
P 		135.5
(3)
P 		1.7
(-3)
A 		134
C 4.1
(-3)
A 		121.9
(0.8)
P 		192
(3)
P 		7.3
(-2.9)
A 		188
avr 2.4
(-3) 		121.7
(1.8) 		150.3
(3) 		3.3
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 15.5
(-3)
A 		88.6
(2.3)
P 		47.7
(-0.7)
P 		61.2
(0.3)
P 		75.8
(1.3)
P 		99
(3)
P 		84
B 25.5
(-3)
A 		74.9
(-0.2)
P 		47.9
(-1.7)
P 		56.9
(-1.2)
P 		92.5
(0.8)
P 		130.8
(3)
P 		105
C 24.2
(-3)
A 		99.4
(1.6)
P 		53
(-1.2)
P 		46.2
(-1.7)
P 		79.1
(0.4)
P 		122.2
(3)
P 		98
avr 21.7
(-3) 		87.6
(1.1) 		49.5
(-1.3) 		54.8
(-0.9) 		82.5
(0.8) 		117.3
(3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183496_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8564
Sequence Type Exemplar sequence
Representative Public ID C26B2.8 NCBI
Target Description C26B2.8 /REP_DB=WormBase Gene ID /WP=CE04094 /TR=Q18197 /GB=AAC24260.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068940(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068940 NCBI Caenorhabditis elegans C26B2.8 (C26B2.8) mRNA, complete cds. 11/11 None
SNAP00000044199 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8014221:8015619:1 11/11 None
GENEFINDER00000044208 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8014110:8015619:1 11/11 None
C26B2.8 ENSEMBL cdna:known chromosome:CEL140:IV:8014110:8015619:1 gene:C26B2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8014115-8015625(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26B2.8
Entrez Gene 182930 Entrez gene
SwissProt Q18197 EMBL-EBI
WormBase CE04094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24260 Hypothetical protein C26B2.8 [Caenorhabditis elegans] ref|NP_501341.1| C26B2.8 [Caenorhabditis elegans] 0.0
blast CAE70935 Hypothetical protein CBG17738 [Caenorhabditis briggsae] 1.0E-179
blast CAE70935 Hypothetical protein CBG17738 [Caenorhabditis briggsae] 1.0E-178
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501341.1 1 41-63
C26B2.8 1 41-63
SNAP00000044199 1 7-29
GENEFINDER00000044208 1 41-63
Sequence
Target Sequence 
>C. ELEGANS:183496_AT
aatgcccacgtggataccgatgtctgggaagtctcggagatgattcggttaaactttgct
gcaaacctaacagaacattagaatacagagaaccagaacacacattccgagagaatcgaa
ttgtccctcgtctgttgccagttgctccggcatatgaactaattgcaacctttagcgacg
aacaaatatcgatgggtcaacttttcgacgctgatatactggacaaacttgcagatcctc
cagtcatgtcagcaggagttgaacttcaagacgagaagctctatacaattatacttgcag
atgctacctcaaaggctgtcacttggctggttgcaaatattgcggcatttgatggacagc
ttgagattcatagaagaacaaagtctgctgtgtcttatcaacccccagattctactgata
gaccagttggaatgcacaccatgattcttgcgctctatgagcagaatgacacgtggacac
agaaagatttggctagaattgcaatggatgatttcaactttacagaatggcttgaagaat
atgcccatgtacttcctgcacaggcacttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCCCACGTGGATACCGATGTCT 322 165 512 Antisense
AGAGAATCGAATTGTCCCTCGTCTG 238 69 621 Antisense
GTTGCCAGTTGCTCCGGCATATGAA 706 439 645 Antisense
ATGGGTCAACTTTTCGACGCTGATA 366 51 703 Antisense
AGATCCTCCAGTCATGTCAGCAGGA 424 65 744 Antisense
CAAAGGCTGTCACTTGGCTGGTTGC 331 193 821 Antisense
AAAGTCTGCTGTGTCTTATCAACCC 149 123 891 Antisense
TTATCAACCCCCAGATTCTACTGAT 211 679 906 Antisense
AATGCACACCATGATTCTTGCGCTC 654 165 942 Antisense
AAGAATATGCCCATGTACTTCCTGC 417 151 1046 Antisense
TGTACTTCCTGCACAGGCACTTGCA 569 559 1059 Antisense
Sequence Source Affymetrix Proprietary Database