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[183495_at]

Description F32A6.1 /REP_DB=WormBase Gene ID /WP=CE04469 /TR=Q19957 /GB=AAA81389.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 02      4grp_high_8_8 > 08      6grp_total > 35      4grp_total > 23      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 105.3
(1.2)
P 		63.4
(-3)
P 		78.5
(-1.5)
P 		122.6
(3)
P 		59
B 96.5
(2.9)
P 		51.9
(-1.3)
P 		33.8
(-3)
A 		97.6
(3)
P 		64
C 135.8
(3)
P 		64.3
(-1)
P 		28
(-3)
A 		73.7
(-0.5)
P 		108
avr 112.5
(3) 		59.9
(-1.8) 		46.8
(-3) 		98
(1.7) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 46.1
(0.4)
A 		44.4
(0.2)
M 		69.3
(3)
P 		52.5
(1.1)
P 		16.4
(-3)
A 		55.7
(1.5)
P 		53
B 80.1
(3)
P 		73.2
(2.3)
P 		46.4
(-0.6)
A 		48.8
(-0.3)
P 		23.4
(-3)
P 		40.6
(-1.2)
P 		57
C 64.7
(1.9)
P 		70.9
(3)
P 		67.1
(2.3)
P 		36.3
(-3)
A 		57.4
(0.7)
P 		59.7
(1.1)
P 		35
avr 63.6
(3) 		62.8
(2.8) 		60.9
(2.5) 		45.9
(-0.4) 		32.4
(-3) 		52
(0.8) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 38.3
(3)
P 		13.8
(-3)
P 		20.5
(-1.4)
P 		18
(-2)
P 		25
B 30.8
(3)
P 		12.8
(-1.7)
P 		7.8
(-3)
A 		20.8
(0.4)
P 		23
C 45
(3)
P 		18.5
(-1.5)
P 		9.7
(-3)
A 		12.4
(-2.5)
P 		35
avr 38
(3) 		15
(-2.5) 		12.7
(-3) 		17.1
(-2) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 8.5
(-1.1)
A 		15.8
(3)
M 		15.1
(2.6)
P 		13.3
(1.6)
P 		5
(-3)
A 		13.6
(1.8)
P 		11
B 27.9
(3)
P 		24.4
(1.9)
P 		11.3
(-2.4)
A 		12.9
(-1.9)
P 		9.5
(-3)
P 		15.1
(-1.2)
P 		18
C 24
(3)
P 		21.6
(2.1)
P 		17.1
(0.5)
P 		7.3
(-3)
A 		18.6
(1.1)
P 		20
(1.6)
P 		17
avr 20.1
(2.7) 		20.6
(3) 		14.5
(-0.8) 		11.2
(-2.9) 		11
(-3) 		16.2
(0.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16300
Sequence Type Exemplar sequence
Representative Public ID F32A6.1 NCBI
Target Description F32A6.1 /REP_DB=WormBase Gene ID /WP=CE04469 /TR=Q19957 /GB=AAA81389.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076500(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076500 NCBI Caenorhabditis elegans F32A6.1 (F32A6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000030573 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5298715:5306293:1 11/11 None
F32A6.1 ENSEMBL cdna:known chromosome:CEL140:X:5305241:5306293:1 gene:F32A6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030567 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5305241-5306294(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32A6.1
Entrez Gene 185182 Entrez gene
SwissProt Q19957 EMBL-EBI
WormBase CE04469 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE68729 Hypothetical protein CBG14655 [Caenorhabditis briggsae] 1.0E-159
blast AAA81386 Hypothetical protein F32A6.2 [Caenorhabditis elegans] ref|NP_508900.3| F32A6.2 [Caenorhabditis elegans] 3.0E-78
blast AAA81389 Hypothetical protein F32A6.1 [Caenorhabditis elegans] ref|NP_508901.1| F32A6.1 [Caenorhabditis elegans] 4.0E-73
blast AAA81389 Hypothetical protein F32A6.1 [Caenorhabditis elegans] ref|NP_508901.1| F32A6.1 [Caenorhabditis elegans] 5.0E-72
blast CAE68729 Hypothetical protein CBG14655 [Caenorhabditis briggsae] 6.0E-19
Sequence
Target Sequence 
>C. ELEGANS:183495_AT
gacatgatggctgcactggatgaacgaaaagataagataacagatcaacggacaaagaga
gacgaggtgaagtatgttgtgcagcaaaaaatgagccagctggctacaatcaaaatggaa
gcagaccaatttatggctgaactggagcgtgataataagagattggttgagaatgtaaaa
gaacttgaaacaactgtaagagattgtgatgacagaatacctgagttgaaaaatgagctg
gcgattttgttggacgataaaaacaaaatggaaggggtttcaggagaaaacttggaagaa
ctgctatctaaagctgccgaaaaagagcaacgaattgacactgaaatcgaggaaatgggc
gatttcgatgagagccgcatgcaagctgaactttggaagggactactcaccattttcgag
act

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATGATGGCTGCACTGGATGAAC 332 369 19 Antisense
GACGAGGTGAAGTATGTTGTGCAGC 386 379 79 Antisense
GAGCCAGCTGGCTACAATCAAAATG 491 385 111 Antisense
GAAGCAGACCAATTTATGGCTGAAC 178 341 136 Antisense
TTATGGCTGAACTGGAGCGTGATAA 306 679 149 Antisense
GAGCTGGCGATTTTGTTGGACGATA 144 387 253 Antisense
AGAACTGCTATCTAAAGCTGCCGAA 651 73 315 Antisense
GGGCGATTTCGATGAGAGCCGCATG 85 493 375 Antisense
GAGCCGCATGCAAGCTGAACTTTGG 467 385 390 Antisense
TGAACTTTGGAAGGGACTACTCACC 39 353 405 Antisense
GGGACTACTCACCATTTTCGAGACT 2 495 417 Antisense
Sequence Source Affymetrix Proprietary Database