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[183494_at]

Description Y39B6B.V /REP_DB=WormBase Gene ID /WP=CE21697 /TR=Q9NET8 /GB=CAB60927.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 58      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.7
(-3)
A 		17.7
(3)
A 		12.6
(-0.1)
A 		12.8
(0.1)
A 		10
B 11.3
(0.4)
A 		13.1
(3)
A 		11.7
(1)
A 		9
(-3)
A 		4
C 16.1
(1.2)
A 		12.4
(-1.4)
A 		18.6
(3)
A 		10.1
(-3)
A 		9
avr 11.7
(-1.3) 		14.4
(3) 		14.3
(2.8) 		10.6
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 20
(2.5)
A 		10.7
(-3)
A 		12.1
(-2.2)
A 		14.8
(-0.6)
A 		17.6
(1.1)
A 		20.9
(3)
A 		10
B 6.8
(-3)
A 		30.2
(3)
A 		17.7
(-0.2)
A 		11.4
(-1.8)
A 		26.9
(2.2)
A 		10.4
(-2.1)
A 		23
C 14.1
(-0.3)
A 		11.3
(-1.9)
A 		12.5
(-1.2)
A 		15
(0.2)
A 		19.7
(3)
A 		9.5
(-3)
A 		10
avr 13.6
(-3) 		17.4
(-0.1) 		14.1
(-2.6) 		13.7
(-2.9) 		21.4
(3) 		13.6
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.8
(-0.2)
A 		3.8
(3)
A 		3.3
(1.4)
A 		1.9
(-3)
A 		2
B 3.6
(3)
A 		3.2
(1.6)
A 		2.7
(-0.2)
A 		1.9
(-3)
A 		2
C 5.3
(1.5)
A 		3.6
(-0.6)
A 		6.5
(3)
A 		1.7
(-3)
A 		5
avr 3.9
(2.3) 		3.5
(1.3) 		4.2
(3) 		1.8
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.7
(-0.6)
A 		3.8
(-0.3)
A 		2.6
(-3)
A 		3.8
(-0.3)
A 		5.3
(3)
A 		5.1
(2.6)
A 		3
B 2.4
(-3)
A 		10
(2.4)
A 		4.3
(-1.7)
A 		3
(-2.6)
A 		10.9
(3)
A 		3.9
(-1.9)
A 		9
C 5.2
(0.9)
A 		3.5
(-2.1)
A 		3.2
(-2.6)
A 		3
(-3)
A 		6.4
(3)
A 		3.2
(-2.6)
A 		3
avr 3.8
(-2.3) 		5.8
(0.6) 		3.4
(-2.9) 		3.3
(-3) 		7.5
(3) 		4.1
(-1.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183494_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19422
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.V NCBI
Target Description Y39B6B.V /REP_DB=WormBase Gene ID /WP=CE21697 /TR=Q9NET8 /GB=CAB60927.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171597(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171597 NCBI Caenorhabditis elegans Y39B6A.11 (Y39B6A.11) mRNA, complete cds. 11/11 None
GENEFINDER00000030720 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19130103:19133511:1 11/11 None
Y39B6A.11 ENSEMBL cdna:known chromosome:CEL140:V:19130103:19133511:1 gene:Y39B6A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19130102-19133511(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.11
Entrez Gene 189733 Entrez gene
SwissProt Q9NET8 EMBL-EBI
WormBase CE21697 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC51066 Hypothetical protein Y39B6A.11 [Caenorhabditis elegans] ref|NP_741687.1| Y39B6A.11 [Caenorhabditis elegans] 1.0E-175
blast CAB07305 B0413.6 [Caenorhabditis elegans] 2.0E-97
blast CAE73137 Hypothetical protein CBG20524 [Caenorhabditis briggsae] 3.0E-96
Sequence
Target Sequence 
>C. ELEGANS:183494_AT
ataaatatctccgtctaaacctcaccgaaaacgcagcggagccccaaatcgaccatttag
agcaagcgcgggctcacctatcccgtataaatctcaccgagacctccccaattgccacgc
ccaccgaagagcgaaaaatcgatatttcaatgacggaaaaccacgagaaattgctcgccg
agatgcgtgctcaggctccgcccaccacccacgtcacttttcaagaggctccgcccactc
agacggtggtaccgcccgttttgcaggaagctccgcctgtcatagccccgcctaccgagc
cagtggccccgcccacttccacacaagctccgcccattgcggcacaggccccgcccactt
cttcggtgtcaaatttgttggcacaacttgccggcggtagtgatagcgacgatagtccca
gaattccggcgccggctgcaacacagaatctggattacagtaaatttttgagcaatttgg
gtgtcggcggaggaatgagcagcgacgaggacgacaatgcgttttctaggccatcatatc
aaaaatctaggccagcggtggggaaatcgatggcggccgccatgatggccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAATATCTCCGTCTAAACCTCAC 365 23 488 Antisense
CTCACCGAAAACGCAGCGGAGCCCC 592 223 508 Antisense
GAGCCCCAAATCGACCATTTAGAGC 43 385 526 Antisense
TTAGAGCAAGCGCGGGCTCACCTAT 703 679 544 Antisense
TCACCTATCCCGTATAAATCTCACC 467 625 561 Antisense
AAATTGCTCGCCGAGATGCGTGCTC 523 115 655 Antisense
CACGTCACTTTTCAAGAGGCTCCGC 556 199 697 Antisense
GGCACAACTTGCCGGCGGTAGTGAT 548 523 867 Antisense
GCGACGATAGTCCCAGAATTCCGGC 657 289 893 Antisense
ACGACAATGCGTTTTCTAGGCCATC 569 91 998 Antisense
GATGGCGGCCGCCATGATGGCCGAT 556 405 1056 Antisense
Sequence Source Affymetrix Proprietary Database