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[183493_at]

Description B0432.3 /REP_DB=WormBase Gene ID /WP=CE07741 /TR=P90993 /GB=AAB37899.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 61      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 66      6grp_total > 61      4grp_total > 02      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2475
1 2 3 4 range
A 1247.4
(-3)
P 		1275.6
(-2.9)
P 		1318.1
(-2.8)
P 		3531.8
(3)
P 		2284
B 1283.6
(-2.2)
P 		1057.1
(-3)
P 		1326
(-2.1)
P 		2764.9
(3)
P 		1708
C 1134.1
(-3)
P 		1225.2
(-2.8)
P 		1174.5
(-2.9)
P 		3513.1
(3)
P 		2379
avr 1221.7
(-2.9) 		1186
(-3) 		1272.9
(-2.7) 		3269.9
(3) 		2084

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1012
1 2 3 4 5 6 range
A 1343.8
(0.5)
P 		1051.9
(-1.6)
P 		1685.7
(3)
P 		1592.3
(2.3)
P 		1189
(-0.6)
P 		855
(-3)
P 		831
B 1306.2
(-1.5)
P 		1423.3
(-0.6)
P 		1866.9
(3)
P 		1352.8
(-1.1)
P 		1851.1
(2.9)
P 		1122.3
(-3)
P 		745
C 1163
(-3)
P 		1389.8
(-1)
P 		1346.6
(-1.4)
P 		1838.9
(3)
P 		1287.8
(-1.9)
P 		1346.6
(-1.4)
P 		676
avr 1271
(-1.1) 		1288.3
(-0.9) 		1633.1
(3) 		1594.7
(2.6) 		1442.6
(0.8) 		1108
(-3) 		525
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 454.2
(1.4)
P 		276.9
(-3)
P 		344.6
(-1.3)
P 		517
(3)
P 		240
B 409.3
(-0.3)
P 		261.1
(-3)
P 		307.3
(-2.2)
P 		589.2
(3)
P 		328
C 375.4
(-2.4)
P 		352.3
(-3)
P 		409.3
(-1.6)
P 		592.4
(3)
P 		240
avr 413
(-0.4) 		296.8
(-3) 		353.7
(-1.7) 		566.2
(3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 544
1 2 3 4 5 6 range
A 247.7
(-1.8)
P 		374.1
(2.1)
P 		367.1
(1.9)
P 		403.9
(3)
P 		358.8
(1.6)
P 		208.2
(-3)
P 		196
B 454.5
(-1.5)
P 		473.7
(-1.2)
P 		453.3
(-1.6)
P 		358.3
(-3)
P 		752.1
(3)
P 		418.5
(-2.1)
P 		394
C 431.1
(1.9)
P 		424.1
(1.5)
P 		342.7
(-3)
P 		369.8
(-1.5)
P 		416.7
(1.1)
P 		450.8
(3)
P 		108
avr 377.8
(-2.3) 		424
(-0.4) 		387.7
(-1.9) 		377.3
(-2.3) 		509.2
(3) 		359.2
(-3) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183493_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4575
Sequence Type Exemplar sequence
Representative Public ID B0432.3 NCBI
Target Description B0432.3 /REP_DB=WormBase Gene ID /WP=CE07741 /TR=P90993 /GB=AAB37899.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061294(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061294 NCBI Caenorhabditis elegans B0432.3 (B0432.3) mRNA, complete cds. 11/11 None
SNAP00000033639 ENSEMBL cdna:SNAP chromosome:CEL140:II:286632:290304:1 11/11 None
GENEFINDER00000033653 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:288938:290304:1 11/11 None
B0432.3 ENSEMBL cdna:known chromosome:CEL140:II:288938:290387:1 gene:B0432.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:288937-290304(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0432.3
Entrez Gene 173415 Entrez gene
SwissProt P90993 EMBL-EBI
WormBase CE07741 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37890 Hypothetical protein B0432.4 [Caenorhabditis elegans] ref|NP_493694.2| B0432.4 [Caenorhabditis elegans] 1.0E-161
blast CAE62839 Hypothetical protein CBG07018 [Caenorhabditis briggsae] 1.0E-148
blast AAH72308 MGC82600 protein [Xenopus laevis] 1.0E-106
blast AAB37899 Hypothetical protein B0432.3 [Caenorhabditis elegans] ref|NP_493695.1| B0432.3 [Caenorhabditis elegans] 1.0E-103
blast CAE62838 Hypothetical protein CBG07017 [Caenorhabditis briggsae] 6.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.3E-30
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.2E-25
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.7E-29
Sequence
Target Sequence 
>C. ELEGANS:183493_AT
gtaagcactcgtggagtccgttcactcaattcaaccaattttccggctccatggccattt
gtgaagaaaggagcatttggacaaaggaaaatcggtccaatgaactacgaaaaattcaaa
tggcccggacagaatcgcgaatttccagaactttctccgaaatttcagaaattgaatcca
aaagagttgcataggtacaccggagtccaggcggacggatttcacgacgaaaagactgga
gagtttgtaccggtgaaagagatgcgatcagagcttgttgtaccgaatttggatggtttc
aaacttcggccctacgtctcctaccgtacagatgttcaaatcgaaaagcgacgagttgcg
tatgagaagaaagttttggaaaaaggatccgaacgattggctgatttacatactgttgag
gatgagagatggccaccaccgaaaatgtcagctgaaacattgttcgaattggcgtacggc
gacact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAAGCACTCGTGGAGTCCGTTCAC 477 461 28 Antisense
TTCCGGCTCCATGGCCATTTGTGAA 9 701 68 Antisense
AAATGGCCCGGACAGAATCGCGAAT 354 119 145 Antisense
TCGCGAATTTCCAGAACTTTCTCCG 318 595 162 Antisense
TAGGTACACCGGAGTCCAGGCGGAC 634 49 219 Antisense
CCAGGCGGACGGATTTCACGACGAA 559 269 234 Antisense
GATGCGATCAGAGCTTGTTGTACCG 647 413 288 Antisense
TGGATGGTTTCAAACTTCGGCCCTA 469 549 317 Antisense
CGTCTCCTACCGTACAGATGTTCAA 50 247 342 Antisense
TGAGGATGAGAGATGGCCACCACCG 683 567 444 Antisense
GTTCGAATTGGCGTACGGCGACACT 129 441 489 Antisense
Sequence Source Affymetrix Proprietary Database