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[183491_at]

Description F15H10.4 /REP_DB=WormBase Gene ID /WP=CE15859 /TR=O45917 /GB=CAA16310.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 27      6grp_cgc > 59      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 1.5
(-3)
A 		16.9
(-1.3)
A 		11.3
(-1.9)
A 		55.9
(3)
A 		54
B 19.3
(-0.1)
A 		9.1
(-2.6)
A 		7.7
(-3)
A 		31.3
(3)
A 		24
C 9.8
(-2.5)
A 		56.3
(3)
A 		5.9
(-3)
A 		43.6
(1.5)
A 		50
avr 10.2
(-2.7) 		27.4
(0.2) 		8.3
(-3) 		43.6
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 12.7
(-1.9)
A 		13.5
(-1.8)
A 		40.7
(3)
A 		6.7
(-3)
A 		10.6
(-2.3)
A 		36.5
(2.3)
A 		34
B 22.9
(-3)
A 		34.3
(0.6)
A 		35.6
(1)
A 		24
(-2.7)
A 		42.1
(3)
A 		41.4
(2.8)
A 		19
C 11.8
(-2)
A 		14.9
(-1.6)
A 		2.3
(-3)
A 		4.8
(-2.7)
A 		57.5
(3)
A 		57.9
(3)
A 		56
avr 15.8
(-2.3) 		20.9
(-1.4) 		26.2
(-0.4) 		11.8
(-3) 		36.7
(1.5) 		45.3
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 0.6
(-3)
A 		3.7
(-0.6)
A 		2.9
(-1.2)
A 		8.2
(3)
A 		8
B 6.2
(2.4)
A 		2.2
(-2.5)
A 		1.8
(-3)
A 		6.7
(3)
A 		5
C 3.2
(-2.5)
A 		16.2
(3)
A 		2.1
(-3)
A 		7.3
(-0.8)
A 		14
avr 3.3
(-1.8) 		7.4
(3) 		2.3
(-3) 		7.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.3
(-2.5)
A 		4.8
(-0.4)
A 		8.9
(3)
A 		1.7
(-3)
A 		3.2
(-1.8)
A 		8.9
(3)
A 		7
B 8
(-2.1)
A 		11.4
(-0.2)
A 		8.6
(-1.8)
A 		6.4
(-3)
A 		17.1
(3)
A 		15.4
(2)
A 		11
C 4.4
(-1.8)
A 		4.6
(-1.7)
A 		0.6
(-3)
A 		1
(-2.9)
A 		18.6
(2.7)
A 		19.4
(3)
A 		19
avr 4.9
(-2) 		6.9
(-1) 		6
(-1.4) 		3
(-3) 		13
(2.2) 		14.6
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183491_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11915
Sequence Type Exemplar sequence
Representative Public ID F15H10.4 NCBI
Target Description F15H10.4 /REP_DB=WormBase Gene ID /WP=CE15859 /TR=O45917 /GB=CAA16310.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182434(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182434 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-314) (tag-314) mRNA, complete cds. 11/11 None
F15H10.4 ENSEMBL cdna:known chromosome:CEL140:V:10428943:10430642:-1 gene:F15H10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002821 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002828 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10428942-10436167(-) 96.52 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-314
Ensembl F15H10.4
Entrez Gene 179455 Entrez gene
SwissProt O45917 EMBL-EBI
WormBase CE31908 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98263 Hypothetical protein F15H10.4 [Caenorhabditis elegans] emb|CAA16310.2| Hypothetical protein F15H10.4 [Caenorhabditis elegans] ref|NP_872234.1| Temporarily Assigned Gene name family member (tag-314) [Caenorhabditis elegans] 0.0
blast CAE64816 Hypothetical protein CBG09610 [Caenorhabditis briggsae] 1.0E-138
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872234.1 3 151-173,193-215,222-244
F15H10.4 3 151-173,193-215,222-244
Sequence
Target Sequence 
>C. ELEGANS:183491_AT
ggttccgatcgatgtgttgactatcatattccgagtcttgattggaatacttattggaat
tattgtatgtgtaccatttgcaattgggtctattgtttctggatctgtacttatgtttct
ttatatgggtttcctagccattcgaacgattccatgtggattgtctggtgaccgagttgg
cacatttttatgtcttatgagatgggcaggaaatcttttcaaaattggaccatatggtaa
actacttgaagaagcaagaaaagaacgaaatgatgcgttagtgaagctagaagaaaatag
agatgatttcaaaaatgcattaagcacttctaaagttttggttggaactacaactacttc
atccactactcaagcaacaacaattggtggaagtacgagcacggcagggacaaccgttga
agccacaaccacaactcaggcaacgtcatgtgctcgtttcaaaaatttacaaaattattt
gaaaaaaaaatactacagtatccttgtatgcatttggtcgtcgacttttctgtatttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCCGATCGATGTGTTGACTATC 533 507 2100 Antisense
GTTTCTGGATCTGTACTTATGTTTC 255 451 2194 Antisense
GTTTCCTAGCCATTCGAACGATTCC 163 451 2228 Antisense
GATTGTCTGGTGACCGAGTTGGCAC 631 433 2258 Antisense
GAACTACAACTACTTCATCCACTAC 38 351 2444 Antisense
TTCATCCACTACTCAAGCAACAACA 368 689 2457 Antisense
AAGTACGAGCACGGCAGGGACAACC 239 149 2490 Antisense
GGGACAACCGTTGAAGCCACAACCA 344 493 2506 Antisense
CAACCACAACTCAGGCAACGTCATG 594 185 2525 Antisense
GTATCCTTGTATGCATTTGGTCGTC 168 455 2597 Antisense
TGGTCGTCGACTTTTCTGTATTTAC 545 549 2614 Antisense
Sequence Source Affymetrix Proprietary Database