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[183490_at]

Description Y39B6B.U /REP_DB=WormBase Gene ID /WP=CE21696 /TR=Q9NET9 /GB=CAB60926.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 34      4grp_high_8_8 > 12      6grp_total > 36      4grp_total > 13      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 103.7
(-0.9)
P 		84.3
(-1.8)
P 		58.7
(-3)
P 		186.4
(3)
P 		128
B 109.7
(-0.9)
P 		72.2
(-2.6)
M 		62.5
(-3)
P 		196
(3)
P 		134
C 118.1
(0.9)
P 		72.3
(-1.9)
P 		54
(-3)
A 		152.8
(3)
P 		99
avr 110.5
(-0.4) 		76.3
(-2.1) 		58.4
(-3) 		178.4
(3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 147.4
(3)
A 		106.7
(-0.3)
P 		114.4
(0.3)
P 		98.1
(-1)
P 		72.8
(-3)
P 		88.5
(-1.7)
P 		75
B 114.6
(1.5)
P 		125.1
(3)
P 		82.2
(-3)
P 		83.7
(-2.8)
P 		96
(-1.1)
P 		103.7
(0)
P 		43
C 71.1
(-1.6)
P 		134
(3)
P 		80.1
(-1)
P 		96.4
(0.2)
P 		52.8
(-3)
A 		98.1
(0.3)
P 		81
avr 111
(1.6) 		121.9
(3) 		92.2
(-0.7) 		92.7
(-0.7) 		73.9
(-3) 		96.8
(-0.1) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 37.7
(3)
P 		18.3
(-2.2)
P 		15.3
(-3)
P 		27.3
(0.2)
P 		22
B 35
(1.5)
P 		17.8
(-2.3)
M 		14.5
(-3)
P 		41.8
(3)
P 		27
C 39.1
(3)
P 		20.8
(-2.4)
P 		18.8
(-3)
A 		25.8
(-0.9)
P 		20
avr 37.3
(3) 		19
(-2.2) 		16.2
(-3) 		31.6
(1.4) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 27.2
(-0.9)
A 		37.9
(3)
P 		24.9
(-1.8)
P 		24.9
(-1.8)
P 		22
(-2.9)
P 		21.6
(-3)
P 		16
B 39.9
(2.5)
P 		41.6
(3)
P 		20
(-3)
P 		22.2
(-2.4)
P 		39
(2.3)
P 		38.7
(2.2)
P 		22
C 26.4
(-0.7)
P 		40.9
(3)
P 		20.4
(-2.2)
P 		19.4
(-2.4)
P 		17.1
(-3)
A 		32.8
(1)
P 		24
avr 31.2
(0.1) 		40.1
(3) 		21.8
(-3) 		22.2
(-2.9) 		26
(-1.6) 		31
(0) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19420
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.U NCBI
Target Description Y39B6B.U /REP_DB=WormBase Gene ID /WP=CE21696 /TR=Q9NET9 /GB=CAB60926.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029057, NM_001029056
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000030723 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19126302:19127480:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029056 8/11 Cross Hyb Matching Probes None
NM_001029057 8/11 Cross Hyb Matching Probes None
SNAP00000030552 8/11 Cross Hyb Matching Probes None
Y39B6A.12 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19126301-19127480(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T45047 hypothetical protein Y39B6B.u [imported] - Caenorhabditis elegans 1.0E-121
blast CAD31811 Hypothetical protein Y39B6A.12a [Caenorhabditis elegans] ref|NP_001024227.1| Y39B6A.12a [Caenorhabditis elegans] 5.0E-45
blast CAI79178 Hypothetical protein Y39B6A.12b [Caenorhabditis elegans] ref|NP_001024228.1| Y39B6A.12b [Caenorhabditis elegans] 5.0E-45
Sequence
Target Sequence 
>C. ELEGANS:183490_AT
ttaactacataattgctccaggagcaccagaatctgaaaatttagctgaaaatcctgaaa
accccgtagatttatcggaaattccgttggaaacgaagccggcgtggtttccgtcgtcaa
aaggccggtctattgtgtgggagcacattacgtgggtggctgaaagccaacgagccgcct
gtaattattgtgctgctgaatttcaagttaaaggcgctgctaagactacaaactacaaga
ttttgggcgctgctaagactacaaactacaggattttgggcgctgcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAACTACATAATTGCTCCAGGAGC 513 661 56 Antisense
TCCTGAAAACCCCGTAGATTTATCG 661 583 108 Antisense
TCCGTTGGAAACGAAGCCGGCGTGG 470 593 138 Antisense
TTCCGTCGTCAAAAGGCCGGTCTAT 214 695 164 Antisense
AAGGCCGGTCTATTGTGTGGGAGCA 322 159 176 Antisense
GGGAGCACATTACGTGGGTGGCTGA 122 495 194 Antisense
GGTGGCTGAAAGCCAACGAGCCGCC 259 499 210 Antisense
GCCGCCTGTAATTATTGTGCTGCTG 508 285 229 Antisense
GAATTTCAAGTTAAAGGCGCTGCTA 189 323 253 Antisense
AAGGCGCTGCTAAGACTACAAACTA 200 161 266 Antisense
AACTACAGGATTTTGGGCGCTGCTA 222 139 319 Antisense
Sequence Source Affymetrix Proprietary Database