[Home] | [Total List]

[183489_at]

Description C24A8.5 /REP_DB=WormBase Gene ID /WP=CE08341 /TR=P91097 /GB=AAK39178.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 25.5
(-3)
A 		39.4
(-2.1)
A 		31.7
(-2.6)
A 		120
(3)
P 		95
B 40.4
(0.7)
A 		17
(-3)
A 		26.1
(-1.5)
A 		54.5
(3)
A 		38
C 42.9
(-2.2)
A 		26.7
(-3)
A 		31.2
(-2.8)
A 		153.8
(3)
P 		127
avr 36.3
(-2.4) 		27.7
(-3) 		29.7
(-2.9) 		109.4
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 35.7
(0.1)
A 		47.3
(2.2)
A 		51.9
(3)
A 		33.4
(-0.3)
A 		35.6
(0.1)
A 		18.1
(-3)
A 		34
B 33.3
(1.4)
A 		41.1
(2.5)
M 		45
(3)
A 		39.3
(2.2)
A 		23
(-0.1)
A 		2
(-3)
A 		43
C 24
(-3)
A 		83
(3)
P 		35.5
(-1.8)
A 		52.1
(-0.1)
A 		32.4
(-2.1)
A 		29.8
(-2.4)
A 		59
avr 31
(-0.9) 		57.1
(3) 		44.1
(1.1) 		41.6
(0.7) 		30.3
(-1) 		16.6
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 9.3
(-2.4)
A 		8.6
(-2.8)
A 		8.3
(-3)
A 		17.6
(3)
P 		9
B 12.9
(3)
A 		4.2
(-3)
A 		6.1
(-1.7)
A 		11.6
(2.1)
A 		9
C 14.2
(-0.9)
A 		7.7
(-3)
A 		10.9
(-1.9)
A 		25.9
(3)
P 		18
avr 12.1
(-0.3) 		6.8
(-3) 		8.4
(-2.2) 		18.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 6.6
(-1.9)
A 		16.8
(3)
A 		11.3
(0.3)
A 		8.5
(-1)
A 		10.7
(0)
A 		4.4
(-3)
A 		12
B 11.6
(2)
A 		13.7
(3)
M 		10.9
(1.7)
A 		10.4
(1.5)
A 		9.3
(1)
A 		0.8
(-3)
A 		13
C 8.9
(-3)
A 		25.3
(3)
P 		9
(-3)
A 		10.5
(-2.4)
A 		10.5
(-2.4)
A 		10
(-2.6)
A 		16
avr 9
(-1.3) 		18.6
(3) 		10.4
(-0.6) 		9.8
(-0.9) 		10.2
(-0.7) 		5.1
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183489_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16218
Sequence Type Exemplar sequence
Representative Public ID C24A8.5 NCBI
Target Description C24A8.5 /REP_DB=WormBase Gene ID /WP=CE08341 /TR=P91097 /GB=AAK39178.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076339(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076339 NCBI Caenorhabditis elegans C24A8.5 (C24A8.5) mRNA, complete cds. 11/11 None
C24A8.5 ENSEMBL cdna:known chromosome:CEL140:X:4328374:4328847:-1 gene:C24A8.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036345 7/11 Cross Hyb Matching Probes None
GENEFINDER00000036349 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4328374-4328848(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24A8.5
Entrez Gene 182831 Entrez gene
SwissProt P91097 EMBL-EBI
WormBase CE08341 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39178 Hypothetical protein C24A8.5 [Caenorhabditis elegans] ref|NP_508740.1| C24A8.5 [Caenorhabditis elegans] 1.0E-73
blast CAE68559 Hypothetical protein CBG14394 [Caenorhabditis briggsae] 7.0E-12
Sequence
Target Sequence 
>C. ELEGANS:183489_AT
ctcgctttgatgttttgtcacacctaaccgatattccaatgcttggaaaacaatatgttc
caggactctggaaacagtttgaagatggtcacgtgacaagcagacatgaacaatcgactg
aacatcgggtcggacaagaatcaataagtcaaagaaatattaccgaaacatcgccaagca
ctcagagaacgcggatgaacgccactttggagaatgagagaggactcactcgatctacag
aaaaggtagacagtgaatttttaattttagtgtcgcaatttgactctttatattctctac
attcaattacaacacttctgttaagtccgactggacaggagtgtttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGCTTTGATGTTTTGTCACACCT 68 231 32 Antisense
GTCACACCTAACCGATATTCCAATG 356 463 48 Antisense
ATGGTCACGTGACAAGCAGACATGA 164 51 116 Antisense
GACTGAACATCGGGTCGGACAAGAA 129 375 147 Antisense
CCGAAACATCGCCAAGCACTCAGAG 565 263 194 Antisense
GAACGCGGATGAACGCCACTTTGGA 475 347 218 Antisense
GAGAGAGGACTCACTCGATCTACAG 321 395 247 Antisense
TTAGTGTCGCAATTTGACTCTTTAT 382 667 298 Antisense
GACTCTTTATATTCTCTACATTCAA 98 375 313 Antisense
ACAACACTTCTGTTAAGTCCGACTG 127 111 340 Antisense
AGTCCGACTGGACAGGAGTGTTTGA 185 59 355 Antisense
Sequence Source Affymetrix Proprietary Database