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[183488_s_at]

Description F25B4.5 /REP_DB=WormBase Gene ID /WP=CE28000 /TR=Q22961 /GB=AAB37083.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 40      6grp_total > 26      4grp_total > 59      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Cup      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 491
1 2 3 4 range
A 567.2
(0.8)
P 		541
(0.4)
P 		701.8
(3)
P 		331.7
(-3)
P 		370
B 497.6
(-0.7)
P 		605.9
(0.6)
P 		798.9
(3)
P 		307.5
(-3)
P 		491
C 536.4
(2.1)
P 		430.8
(-0.7)
P 		573
(3)
P 		341.5
(-3)
P 		232
avr 533.7
(0.4) 		525.9
(0.3) 		691.2
(3) 		326.9
(-3) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 559
1 2 3 4 5 6 range
A 807.2
(3)
P 		808.1
(3)
P 		564.9
(-2.4)
P 		539.7
(-3)
P 		609.6
(-1.4)
P 		619
(-1.2)
P 		268
B 838.2
(1.5)
P 		982.5
(3)
P 		423.1
(-3)
P 		570.7
(-1.4)
P 		473.2
(-2.5)
P 		561.4
(-1.5)
P 		559
C 757.1
(0.3)
P 		969.6
(3)
P 		658.6
(-1)
P 		501
(-3)
P 		513.3
(-2.8)
P 		536.1
(-2.6)
P 		469
avr 800.8
(1.2) 		920.1
(3) 		548.9
(-2.7) 		537.1
(-2.9) 		532
(-3) 		572.2
(-2.4) 		388
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 206.5
(3)
P 		117.4
(-0.4)
P 		183.5
(2.1)
P 		48.6
(-3)
P 		158
B 158.7
(1.7)
P 		149.6
(1.2)
P 		185.1
(3)
P 		65.5
(-3)
P 		120
C 177.6
(2.1)
P 		123.9
(-0.2)
P 		199.7
(3)
P 		57.6
(-3)
P 		142
avr 180.9
(2.6) 		130.3
(0.3) 		189.4
(3) 		57.2
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 148.8
(-2.1)
P 		287.4
(3)
P 		123
(-3)
P 		136.9
(-2.5)
P 		184
(-0.8)
P 		150.7
(-2)
P 		164
B 291.7
(2.1)
P 		327
(3)
P 		102.8
(-3)
P 		151.2
(-1.7)
P 		192.3
(-0.6)
P 		209.3
(-0.1)
P 		224
C 280.6
(2.5)
P 		295.9
(3)
P 		167.6
(-0.9)
P 		100.8
(-3)
P 		166.1
(-1)
P 		179.4
(-0.6)
P 		195
avr 240.4
(0.8) 		303.4
(3) 		131.1
(-2.9) 		129.6
(-3) 		180.8
(-1.2) 		179.8
(-1.3) 		174
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183488_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11386
Sequence Type Exemplar sequence
Representative Public ID F25B4.5 NCBI
Target Description F25B4.5 /REP_DB=WormBase Gene ID /WP=CE28000 /TR=Q22961 /GB=AAB37083.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072094 NCBI Caenorhabditis elegans F25B4.5 (F25B4.5) mRNA, complete cds. 11/11 None
SNAP00000033031 ENSEMBL cdna:SNAP chromosome:CEL140:V:5681469:5685225:-1 11/11 None
GENEFINDER00000033043 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5681469:5685225:-1 11/11 None
F25B4.5.1 ENSEMBL cdna:known chromosome:CEL140:V:5681201:5685228:-1 gene:F25B4.5 11/11 None
F25B4.5.2 ENSEMBL cdna:known chromosome:CEL140:V:5681201:5685225:-1 gene:F25B4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5681468-5685161(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F25B4.5
Entrez Gene 178955 Entrez gene
SwissProt Q22961 EMBL-EBI
WormBase CE28000 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605012_AT similar to PRP39 pre-mRNA processing factor 39 homolog cfa
CANINE:1592903_AT similar to PRP39 pre-mRNA processing factor 39 homolog cfa
CANINE_2:CFA.2377.1.S1_AT similar to PRP39 pre-mRNA processing factor 39 homolog cfa
CANINE_2:CFAAFFX.21687.1.S1_S_AT similar to PRP39 pre-mRNA processing factor 39 homolog cfa
DROSOPHILA_2:1635187_S_AT dm
DROSGENOME1:154363_AT dm
HG-U133_PLUS_2:220553_S_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) hs
HG-U133A:220553_S_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) hs
HG-U133A_2:220553_S_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) hs
HU35KSUBA:RC_AA450200_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) hs
U133_X3P:G8922887_3P_S_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) hs
HG-U95B:43472_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) hs
MU11KSUBA:AA288861_S_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) mm
MG-U74AV2:97548_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) mm
MG-U74AV2:161795_R_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) mm
MG-U74BV2:162730_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) mm
MOE430A:1428172_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) mm
MOUSE430A_2:1428172_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) mm
MOUSE430_2:1428172_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) mm
MOE430A:1452688_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) mm
MOUSE430A_2:1452688_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) mm
MOUSE430_2:1452688_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) mm
MOE430A:1428171_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) mm
MOUSE430A_2:1428171_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) mm
MOUSE430_2:1428171_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) mm
MOE430B:1444164_AT PRP39 pre-mRNA processing factor 39 homolog (yeast), mRNA (cDNA clone MGC:37077 IMAGE:4951324) mm
MOUSE430_2:1444164_AT PRP39 pre-mRNA processing factor 39 homolog (yeast), mRNA (cDNA clone MGC:37077 IMAGE:4951324) mm
MU19KSUBB:TC31747_AT PRP39 pre-mRNA processing factor 39 homolog (yeast), mRNA (cDNA clone MGC:37077 IMAGE:4951324) mm
MU19KSUBB:TC34496_AT PRP39 pre-mRNA processing factor 39 homolog (yeast), mRNA (cDNA clone MGC:37077 IMAGE:4951324) mm
RAE230A:1389684_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) (predicted) rn
RAT230_2:1389684_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) (predicted) rn
RG-U34B:RC_AA850679_AT PRP39 pre-mRNA processing factor 39 homolog (yeast) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6396 RNA processing inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37083 Hypothetical protein F25B4.5 [Caenorhabditis elegans] ref|NP_504495.1| F25B4.5 [Caenorhabditis elegans] 0.0
blast CAE64590 Hypothetical protein CBG09345 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183488_S_AT
acacggagcgccatcggaatttgtgatgaatcaatacgaatcgcttattagagattccca
atcgtccccaaatcttcactcgttctacagtttaaaactcgcaagatatcatcaaaagtc
gcgtcgtgatcctaaacttgctcagaaagttctgaagaaggcaatctcgatcgacccatt
caatttgcaattgtacagtcaatatgttgatattgcgtattcttctgaatcgatgtctga
attagatgttattcaatcgttcgacgtcgcactggacagtaatctcagattagaggacaa
agttcgattcagccaacggaaactcgattttttggaagaacttggaaataatattcttgc
agttgaggatcatcgtgatttccattataaccttcttggtcaactgccggataatgtgac
gattcgaactcgatttgtgaacgacccaagcagagttgcactggctccagctatgcctcc
ccaacaacagatggtttatgctccagctattcagcaacaaccagccatgaatatgatgcc
aatgatgccaatgcaaatgccctacatggcttcttcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACGGAGCGCCATCGGAATTTGTG 483 89 1521 Antisense
TATTAGAGATTCCCAATCGTCCCCA 249 663 1566 Antisense
CCAAATCTTCACTCGTTCTACAGTT 709 273 1588 Antisense
AAAAGTCGCGTCGTGATCCTAAACT 164 133 1634 Antisense
TCTCGATCGACCCATTCAATTTGCA 607 611 1685 Antisense
TATTCAATCGTTCGACGTCGCACTG 278 661 1770 Antisense
CATCGTGATTTCCATTATAACCTTC 157 213 1891 Antisense
TATAACCTTCTTGGTCAACTGCCGG 147 653 1906 Antisense
TGCCTCCCCAACAACAGATGGTTTA 627 583 1994 Antisense
GATGGTTTATGCTCCAGCTATTCAG 12 409 2010 Antisense
AAATGCCCTACATGGCTTCTTCAGC 663 117 2075 Antisense
Sequence Source Affymetrix Proprietary Database