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[183487_at]

Description R05G6.5 /REP_DB=WormBase Gene ID /WP=CE07418 /TR=Q21753 /GB=AAB00623.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 54.1
(1.5)
P 		24.5
(-3)
A 		36.1
(-1.2)
A 		63.9
(3)
A 		39
B 55.2
(-2.5)
P 		84.8
(0.5)
A 		49.8
(-3)
A 		109.4
(3)
P 		60
C 74.5
(-0.6)
P 		45.5
(-3)
A 		60.6
(-1.8)
M 		118.4
(3)
P 		73
avr 61.3
(-1.5) 		51.6
(-2.7) 		48.8
(-3) 		97.2
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 74.1
(3)
A 		50
(0.3)
A 		74.5
(3)
P 		68.6
(2.4)
A 		27.5
(-2.1)
A 		19.6
(-3)
A 		55
B 81.2
(3)
P 		81.6
(3)
P 		78.5
(2.7)
P 		25.7
(-2.8)
A 		23.4
(-3)
A 		41.2
(-1.2)
A 		58
C 67.8
(0.2)
P 		57.9
(-0.6)
P 		103.7
(3)
A 		52.8
(-1)
A 		27
(-3)
A 		30
(-2.8)
A 		77
avr 74.4
(1.9) 		63.2
(0.7) 		85.6
(3) 		49
(-0.7) 		26
(-3) 		30.3
(-2.6) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 19.7
(3)
P 		5.3
(-3)
A 		9.4
(-1.3)
A 		9.4
(-1.3)
A 		14
B 17.6
(0.1)
P 		20.9
(1.8)
A 		11.5
(-3)
A 		23.3
(3)
P 		12
C 24.7
(3)
P 		13.1
(-3)
A 		21.1
(1.1)
M 		20
(0.6)
P 		12
avr 20.7
(3) 		13.1
(-3) 		14
(-2.3) 		17.6
(0.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 13.7
(1.1)
A 		17.8
(3)
A 		16.2
(2.3)
P 		17.4
(2.8)
A 		8.3
(-1.4)
A 		4.8
(-3)
A 		13
B 28.2
(3)
P 		27.2
(2.7)
P 		19.1
(0.4)
P 		6.8
(-3)
A 		9.5
(-2.2)
A 		15.4
(-0.6)
A 		21
C 25.1
(2.6)
P 		17.7
(0.1)
P 		26.4
(3)
A 		10.6
(-2.4)
A 		8.7
(-3)
A 		10
(-2.6)
A 		18
avr 22.3
(3) 		20.9
(2.4) 		20.6
(2.2) 		11.6
(-1.8) 		8.8
(-3) 		10.1
(-2.4) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183487_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8607
Sequence Type Exemplar sequence
Representative Public ID R05G6.5 NCBI
Target Description R05G6.5 /REP_DB=WormBase Gene ID /WP=CE07418 /TR=Q21753 /GB=AAB00623.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068811(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068811 NCBI Caenorhabditis elegans R05G6.5 (R05G6.5) mRNA, complete cds. 11/11 None
GENEFINDER00000020454 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7508567:7509459:1 11/11 None
R05G6.5 ENSEMBL cdna:known chromosome:CEL140:IV:7508567:7509459:1 gene:R05G6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020435 8/11 Cross Hyb Matching Probes None
SNAP00000020436 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7508572-7509465(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05G6.5
Entrez Gene 187622 Entrez gene
SwissProt Q21753 EMBL-EBI
WormBase CE07418 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501212 R05G6.5 [Caenorhabditis elegans] gb|AAB00623.1| Hypothetical protein R05G6.5 [Caenorhabditis elegans] 1.0E-106
blast CAE61903 Hypothetical protein CBG05895 [Caenorhabditis briggsae] 5.0E-87
blast XP_414687 PREDICTED: similar to Nucleoside diphosphate kinase homolog 5 (NDK-H 5) (NDP kinase homolog 5) (nm23-H5) (Testis-specific nm23 homolog) (Inhibitor of p53-induced apoptosis-beta) (IPIA-beta) [Gallus gallus] 3.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR007858 EMBL-EBI Dpy-30 3.1E-19
Sequence
Target Sequence 
>C. ELEGANS:183487_AT
atgtaccgctcggaagtctctaagccacaactggaaaatccaaacctagtcgatagaata
attgtaattattctgccgaactatttctatgaatatgaatccgtactgaagcacataaca
aaagaaaacttcgggattatagagaaaactgtgaagcattttaaaactgaagaagtcatg
gagtggaaaagtgctgatcttgaatcccaagatatctggaacttatcagacaggctaata
gacggaccatgcatgttactattgtgtcaacgagcgaatgcttttattgagatgaaagaa
gtggccaaatatcacaatgtgatcgctaagagaatgagttcaagtgatggaatatattat
tcaaaaacgacaattgccgcctatcacgatataattttctttttccccaagtacattgac
gaaagagcaatgctgaaacatgccaaggattatctctcagtagaagtatggccgaaactg
agccagggactggctcgcgtagcagttgagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTACCGCTCGGAAGTCTCTAAGC 218 47 13 Antisense
CGGAAGTCTCTAAGCCACAACTGGA 265 243 23 Antisense
ATTATTCTGCCGAACTATTTCTATG 101 15 79 Antisense
GAATCCGTACTGAAGCACATAACAA 97 331 109 Antisense
GAAAAGTGCTGATCTTGAATCCCAA 41 355 198 Antisense
GACAGGCTAATAGACGGACCATGCA 698 367 241 Antisense
GGACCATGCATGTTACTATTGTGTC 244 523 256 Antisense
TATTGTGTCAACGAGCGAATGCTTT 29 665 272 Antisense
AACATGCCAAGGATTATCTCTCAGT 580 137 449 Antisense
GGCCGAAACTGAGCCAGGGACTGGC 648 541 482 Antisense
GACTGGCTCGCGTAGCAGTTGAGAG 572 375 500 Antisense
Sequence Source Affymetrix Proprietary Database