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[183486_at]

Description C17A2.5 /REP_DB=WormBase Gene ID /WP=CE08243 /TR=O16531 /GB=AAB66028.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 5
(-3)
A 		67.1
(3)
A 		65
(2.8)
A 		32.1
(-0.4)
A 		62
B 5.3
(-3)
A 		12.2
(-1.3)
A 		29.6
(3)
A 		10.1
(-1.8)
A 		24
C 32.4
(-3)
A 		77.7
(3)
A 		38.3
(-2.2)
A 		46.9
(-1.1)
A 		45
avr 14.2
(-3) 		52.3
(3) 		44.3
(1.7) 		29.7
(-0.6) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 3.7
(-2.4)
A 		2.7
(-3)
A 		12.4
(3)
A 		6.1
(-0.9)
A 		7.1
(-0.3)
A 		7.4
(-0.1)
A 		10
B 4.5
(-3)
A 		57
(3)
A 		12.7
(-2.1)
A 		38.5
(0.9)
A 		5.2
(-2.9)
A 		8.6
(-2.5)
A 		53
C 37.1
(1.7)
A 		31.9
(0.9)
A 		4.4
(-3)
A 		14.4
(-1.6)
A 		4.7
(-3)
A 		46.3
(3)
A 		42
avr 15.1
(-0.7) 		30.5
(3) 		9.8
(-2) 		19.7
(0.4) 		5.7
(-3) 		20.8
(0.7) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 1.8
(-3)
A 		14.6
(2.1)
A 		17
(3)
A 		4.7
(-1.9)
A 		15
B 1.7
(-3)
A 		3
(-1.5)
A 		6.8
(3)
A 		2.2
(-2.4)
A 		5
C 10.7
(-1.8)
A 		22.3
(3)
A 		13.4
(-0.7)
A 		7.9
(-3)
A 		14
avr 4.7
(-3) 		13.3
(3) 		12.4
(2.4) 		4.9
(-2.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1
(-2.1)
A 		2.7
(3)
A 		1.5
(-0.6)
A 		2.2
(1.5)
A 		1.8
(0.3)
A 		2
B 1.6
(-3)
A 		19
(3)
A 		3.1
(-2.5)
A 		10.2
(-0)
A 		2.1
(-2.8)
A 		3.2
(-2.4)
A 		17
C 13.8
(2.3)
A 		9.7
(0.6)
A 		1.1
(-3)
A 		2.9
(-2.3)
A 		1.5
(-2.8)
A 		15.5
(3)
A 		14
avr 5.4
(-0.4) 		9.9
(3) 		2.3
(-2.7) 		4.9
(-0.8) 		1.9
(-3) 		6.8
(0.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183486_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4176
Sequence Type Exemplar sequence
Representative Public ID C17A2.5 NCBI
Target Description C17A2.5 /REP_DB=WormBase Gene ID /WP=CE08243 /TR=O16531 /GB=AAB66028.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062264 NCBI Caenorhabditis elegans C17A2.5 (C17A2.5) mRNA, complete cds. 11/11 None
SNAP00000028365 ENSEMBL cdna:SNAP chromosome:CEL140:II:3833243:3836008:-1 11/11 None
GENEFINDER00000028374 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3830073:3836008:-1 11/11 None
C17A2.5 ENSEMBL cdna:known chromosome:CEL140:II:3833243:3836008:-1 gene:C17A2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3833241-3836007(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17A2.5
Entrez Gene 182701 Entrez gene
SwissProt O16531 EMBL-EBI
WormBase CE08243 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66028 Hypothetical protein C17A2.5 [Caenorhabditis elegans] ref|NP_494665.1| C17A2.5 [Caenorhabditis elegans] 0.0
blast CAB04108 Hypothetical protein F14B6.5 [Caenorhabditis elegans] ref|NP_493089.2| F14B6.5 [Caenorhabditis elegans] 0.0
blast CAB04376 Hypothetical protein F41D3.10 [Caenorhabditis elegans] emb|CAB04381.2| Hypothetical protein F41D3.5 [Caenorhabditis elegans] ref|NP_493098.1| F41D3.10 [Caenorhabditis elegans] ref|NP_493094.1| F41D3.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494665.1 11 12-31,36-58,78-97,156-178,185-204,214-231,261-283,293-315,327-349,387-409,416-436
C17A2.5 11 12-31,36-58,78-97,156-178,185-204,214-231,261-283,293-315,327-349,387-409,416-436
SNAP00000028365 9 12-31,36-58,78-97,138-160,216-238,248-270,283-305,315-334,341-361
GENEFINDER00000028374 11 12-31,36-58,78-97,137-159,171-188,198-215,245-267,277-299,311-333,371-393,400-420
Sequence
Target Sequence 
>C. ELEGANS:183486_AT
gggatccgttggaacctgtgaaccattgtttttttcacgctgtcagtatttttttgacaa
atttcaagagaggattaaagctgaaaagccagactatctgtttatcatttcaagatacat
atcaattggtgatgcaatacctgaaatccatacaaccacaaatttcattttcgacaaaga
tccaatctatcaaactatgaagaaacaacttctaggactagtagcaagtacaaagttcaa
agtttacattctcgatgcagtacccagacatgacacttataagacacaatttatcgcgga
ttgggcgaaggaaggtgcagatttagtagaaataaataaacggcttggccaaaccaatgc
tcaattgcttgatgggcccgcctatgaactagctcgtcgccggaactctgagcttgtaaa
agattgtggcggtcggtgtgttcttgtggattataaaccggttttctacaattttactag
ccaatcctaccggatgttcgacgaaatggggtactcctacttctcaatggcacaacattt
gacgccgcttggcttggagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATCCGTTGGAACCTGTGAACCA 93 495 1608 Antisense
AACCATTGTTTTTTTCACGCTGTCA 18 147 1628 Antisense
TACATTCTCGATGCAGTACCCAGAC 235 645 1852 Antisense
AACGGCTTGGCCAAACCAATGCTCA 682 141 1946 Antisense
TTGATGGGCCCGCCTATGAACTAGC 171 707 1976 Antisense
GTCGCCGGAACTCTGAGCTTGTAAA 636 473 2003 Antisense
AAAGATTGTGGCGGTCGGTGTGTTC 453 121 2026 Antisense
ATTTTACTAGCCAATCCTACCGGAT 411 13 2078 Antisense
TACTCCTACTTCTCAATGGCACAAC 371 645 2119 Antisense
AATGGCACAACATTTGACGCCGCTT 260 163 2133 Antisense
TTTGACGCCGCTTGGCTTGGAGCAA 562 667 2145 Antisense
Sequence Source Affymetrix Proprietary Database