[Home] | [Total List]

[183485_at]

Description F46C8.7 /REP_DB=WormBase Gene ID /WP=CE04582 /TR=Q9GYP4 /GB=AAF99945.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 102.4
(0.6)
A 		100.1
(0.4)
A 		65
(-3)
A 		127.3
(3)
A 		62
B 131.2
(3)
P 		87.5
(-2.1)
A 		80
(-3)
A 		84.2
(-2.5)
A 		51
C 97.9
(-0.8)
P 		77.4
(-2.2)
A 		66.7
(-3)
P 		150
(3)
A 		83
avr 110.5
(1.8) 		88.3
(-0.9) 		70.6
(-3) 		120.5
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 46.5
(-1.3)
A 		48.7
(-0.9)
A 		65.5
(2.3)
A 		37.9
(-3)
A 		68.9
(3)
A 		53.5
(0)
A 		31
B 69.8
(2.3)
M 		73.4
(3)
A 		57
(-0.3)
A 		60.4
(0.4)
A 		61.9
(0.7)
P 		43.8
(-3)
A 		30
C 50.4
(-1)
A 		83.5
(3)
A 		51.1
(-0.9)
A 		34.2
(-3)
A 		56.3
(-0.3)
P 		68
(1.1)
M 		49
avr 55.6
(-0.2) 		68.5
(3) 		57.9
(0.4) 		44.2
(-3) 		62.4
(1.5) 		55.1
(-0.3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 37.3
(3)
A 		21.7
(-1.6)
A 		17
(-3)
A 		18.6
(-2.5)
A 		20
B 41.9
(3)
P 		21.6
(-2.1)
A 		18.5
(-2.9)
A 		17.9
(-3)
A 		24
C 32.4
(3)
P 		22.3
(-3)
A 		23.2
(-2.5)
P 		25.3
(-1.2)
A 		10
avr 37.2
(3) 		21.9
(-2.2) 		19.6
(-3) 		20.6
(-2.7) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 8.6
(-3)
A 		17.3
(1.3)
A 		14.3
(-0.2)
A 		9.6
(-2.5)
A 		20.8
(3)
A 		13
(-0.8)
A 		12
B 24.3
(2.6)
M 		24.4
(2.6)
A 		13.8
(-3)
A 		16
(-1.8)
A 		25.1
(3)
P 		16.3
(-1.7)
A 		11
C 18.7
(0.8)
A 		25.5
(3)
A 		13
(-1)
A 		6.9
(-3)
A 		18.2
(0.6)
P 		22.8
(2.1)
M 		19
avr 17.2
(0.3) 		22.4
(3) 		13.7
(-1.5) 		10.8
(-3) 		21.4
(2.5) 		17.4
(0.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183485_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17100
Sequence Type Exemplar sequence
Representative Public ID F46C8.7 NCBI
Target Description F46C8.7 /REP_DB=WormBase Gene ID /WP=CE04582 /TR=Q9GYP4 /GB=AAF99945.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076874(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076874 NCBI Caenorhabditis elegans F46C8.7 (F46C8.7) mRNA, complete cds. 11/11 None
GENEFINDER00000044538 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7538078:7540073:-1 11/11 None
F46C8.7 ENSEMBL cdna:known chromosome:CEL140:X:7537788:7540075:-1 gene:F46C8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044527 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7538076-7539327(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46C8.7
Entrez Gene 185848 Entrez gene
SwissProt Q9GYP4 EMBL-EBI
WormBase CE04582 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99945 Hypothetical protein F46C8.7 [Caenorhabditis elegans] ref|NP_509275.1| F46C8.7 [Caenorhabditis elegans] 1.0E-153
blast AAF99945 Hypothetical protein F46C8.7 [Caenorhabditis elegans] ref|NP_509275.1| F46C8.7 [Caenorhabditis elegans] 1.0E-149
blast CAE70233 Hypothetical protein CBG16720 [Caenorhabditis briggsae] 1.0E-139
blast CAE70233 Hypothetical protein CBG16720 [Caenorhabditis briggsae] 1.0E-135
blast CAE60866 Hypothetical protein CBG04577 [Caenorhabditis briggsae] 2.0E-17
blast CAE60866 Hypothetical protein CBG04577 [Caenorhabditis briggsae] 3.0E-17
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 2.20000004768372
scop a.4.1.Centromere-binding All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding 1.79999995231628
scop a.4.1.Centromere-binding All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding 1.89999997615814
Sequence
Target Sequence 
>C. ELEGANS:183485_AT
ggaactacttccacattacgggatcactcaaaaaactgtgtgaaaatgattgactctgtc
ataaagaattttgatgtggaaaagtcgaagagaacggacactagctctgaaaacgacccg
agagtaattggacgtgcacatagcatcttgaagccatatggtcttgctggaaactactgg
gaaaagtttggagaagtgatgattgatgtggtactggcgcaagaggcagtgcgagatctt
ccgggagctggacaggcttgggtaatttttaccgcttgcttggtggatcagatgagagct
ggatttgatgagaacagaaaaactgaccatgaagctcaaatgaaaaaaaacacggttttg
caccacgctacgcagcagctattggaagacaatgtggcatccacctcagcaacaactgca
tcgtctggaaatggtgagtgttcgagctccaaccaaccatccacgagctccaatcaaccg
ttggcatgcccatttgcaagaatgtctctgacgcctaaggacgctcgtgtgatcgaaagt
ctctccggtagcggcggcagcggcagcagcggtaacggagacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTACTTCCACATTACGGGATC 186 527 367 Antisense
CGGACACTAGCTCTGAAAACGACCC 510 241 461 Antisense
AGATCTTCCGGGAGCTGGACAGGCT 73 67 600 Antisense
TTTACCGCTTGCTTGGTGGATCAGA 350 671 634 Antisense
ACCACGCTACGCAGCAGCTATTGGA 27 85 728 Antisense
AGACAATGTGGCATCCACCTCAGCA 228 73 753 Antisense
AATGGTGAGTGTTCGAGCTCCAACC 354 163 796 Antisense
GAGCTCCAATCAACCGTTGGCATGC 405 387 831 Antisense
GAATGTCTCTGACGCCTAAGGACGC 17 333 866 Antisense
TGTGATCGAAAGTCTCTCCGGTAGC 644 555 894 Antisense
GCGGCAGCAGCGGTAACGGAGACAT 288 291 926 Antisense
Sequence Source Affymetrix Proprietary Database