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[183484_at]

Description ZK470.1 /REP_DB=WormBase Gene ID /WP=CE05085 /TR=Q23508 /GB=AAA80398.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 90      6grp_total > 08      4grp_total > 52      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 228.7
(1.4)
P 		199.8
(0.4)
P 		278
(3)
P 		97
(-3)
P 		181
B 202.8
(1)
P 		252.3
(3)
P 		163.5
(-0.6)
P 		103.3
(-3)
P 		149
C 250.4
(1.1)
P 		302.1
(3)
P 		162.5
(-2.1)
P 		138.2
(-3)
P 		164
avr 227.3
(2) 		251.4
(3) 		201.3
(0.8) 		112.8
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 283
(3)
P 		135.9
(-2.5)
P 		139.3
(-2.3)
P 		143.3
(-2.2)
P 		121.7
(-3)
P 		152.3
(-1.9)
P 		161
B 234.1
(3)
P 		156.8
(-0.5)
P 		124.2
(-2)
P 		160.3
(-0.4)
P 		171.3
(0.1)
P 		102.3
(-3)
P 		132
C 166.7
(-0.7)
P 		174.2
(-0.3)
P 		236.9
(3)
P 		219.5
(2.1)
P 		129.8
(-2.7)
P 		123.2
(-3)
P 		114
avr 227.9
(3) 		155.6
(-1.3) 		166.8
(-0.6) 		174.4
(-0.1) 		140.9
(-2.1) 		125.9
(-3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 83.3
(3)
P 		43.4
(-0.5)
P 		72.7
(2.1)
P 		14.2
(-3)
P 		69
B 64.7
(3)
P 		62.3
(2.7)
P 		37.9
(-0.8)
P 		22
(-3)
P 		43
C 82.9
(2.6)
P 		86.8
(3)
P 		56.7
(0.2)
P 		23.3
(-3)
P 		64
avr 77
(3) 		64.2
(1.7) 		55.8
(0.8) 		19.8
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 52.2
(3)
P 		48.3
(1.9)
P 		30.3
(-3)
P 		36.3
(-1.4)
P 		36.7
(-1.2)
P 		37.1
(-1.1)
P 		22
B 81.5
(3)
P 		52.2
(-0.4)
P 		30.1
(-3)
P 		42.5
(-1.6)
P 		69.6
(1.6)
P 		38.1
(-2.1)
P 		51
C 61.8
(3)
P 		53.2
(0.5)
P 		60.3
(2.6)
P 		44.1
(-2.2)
P 		42
(-2.8)
P 		41.2
(-3)
P 		21
avr 65.2
(3) 		51.2
(-0.2) 		40.2
(-2.7) 		41
(-2.5) 		49.4
(-0.6) 		38.8
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183484_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16176
Sequence Type Exemplar sequence
Representative Public ID ZK470.1 NCBI
Target Description ZK470.1 /REP_DB=WormBase Gene ID /WP=CE05085 /TR=Q23508 /GB=AAA80398.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076307(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076307 NCBI Caenorhabditis elegans ZK470.1 (ZK470.1) mRNA, complete cds. 9/11 None
ZK470.1 ENSEMBL cdna:known chromosome:CEL140:X:4163621:4169765:1 gene:ZK470.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000137 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4163621-4169617(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK470.1
Entrez Gene 191323 Entrez gene
SwissProt Q23508 EMBL-EBI
WormBase CE31268 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80398 Hypothetical protein ZK470.1 [Caenorhabditis elegans] ref|NP_508708.2| ZK470.1 [Caenorhabditis elegans] 0.0
blast CAE68532 Hypothetical protein CBG14357 [Caenorhabditis briggsae] 6.0E-62
blast CAE68530 Hypothetical protein CBG14354 [Caenorhabditis briggsae] 2.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508708.2 10 7-29,76-93,113-135,150-167,254-276,291-313,330-352,362-384,404-426,453-475
ZK470.1 10 7-29,76-93,113-135,150-167,254-276,291-313,330-352,362-384,404-426,453-475
Sequence
Target Sequence 
>C. ELEGANS:183484_AT
gccagacttgcacttttgctacttccatctgcaatctcatttcttcttctttcagtttgt
cttgtgatcaagaaagaaagactgaattatgaccctgggtttagcatttctctctcgaag
tgggtagtgaactatatttccttgttttcgttcaagtttcgagtgttgggtttaagtttc
ggtcagccgacccttaacgagaaaattttgacgtacacatacacacacacgtgtgtttgc
atcaagttcattccatttttcagagccttggttcgtgtactctacgtcgttgtcatcatt
gatttcctcagtaggctctttctgttcttccgtctcgctgaggacaacatcgactttgtt
gttctaaccggatcggagaacggggactttgtccttcacacgtttctcaatgttggctta
caagtattgtttttttttttgattcgatcatatggtttgacctgtcaccttgcaggtttc
catctgcgtctactacttatcgcccgtgtatattccaattgccctgtctctcttcgtcaa
acatttcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGACTTGCACTTTTGCTACTTC 679 279 1096 Antisense
TGCTACTTCCATCTGCAATCTCATT 416 579 1112 Antisense
ATGACCCTGGGTTTAGCATTTCTCT 184 43 1184 Antisense
GCATCAAGTTCATTCCATTTTTCAG 283 309 1334 Antisense
GTGTACTCTACGTCGTTGTCATCAT 107 487 1370 Antisense
ATTTCCTCAGTAGGCTCTTTCTGTT 536 17 1397 Antisense
TCTTCCGTCTCGCTGAGGACAACAT 651 615 1421 Antisense
TCACCTTGCAGGTTTCCATCTGCGT 84 627 1560 Antisense
CCATCTGCGTCTACTACTTATCGCC 610 269 1575 Antisense
ATCGCCCGTGTATATTCCAATTGCC 1 39 1594 Antisense
GTCTCTCTTCGTCAAACATTTCAGG 538 469 1621 Antisense
Sequence Source Affymetrix Proprietary Database