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[183482_at]

Description C17A2.3 /REP_DB=WormBase Gene ID /WP=CE08241 /TR=O16535 /GB=AAB66027.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 51.5
(0.5)
A 		67.6
(1.8)
A 		5.2
(-3)
A 		83.5
(3)
A 		78
B 8.4
(-3)
A 		13.5
(-2.3)
A 		8.9
(-2.9)
A 		54.9
(3)
A 		47
C 5.8
(-3)
A 		59.1
(0.6)
A 		41.2
(-0.6)
A 		93.7
(3)
M 		88
avr 21.9
(-2.6) 		46.7
(-0.1) 		18.4
(-3) 		77.4
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 74.9
(3)
A 		47.6
(0.5)
A 		52.7
(1)
A 		39.4
(-0.2)
A 		47.4
(0.5)
A 		9
(-3)
A 		66
B 11
(-2.6)
A 		56.6
(1.6)
A 		34.1
(-0.5)
A 		18.4
(-1.9)
A 		71.7
(3)
A 		6.4
(-3)
A 		65
C 15.7
(-2)
A 		51.7
(3)
A 		32.4
(0.3)
A 		52
(3)
A 		8.4
(-3)
A 		34.2
(0.6)
A 		44
avr 33.9
(-0.1) 		52
(3) 		39.7
(0.9) 		36.6
(0.4) 		42.5
(1.4) 		16.5
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.8
(3)
A 		14.7
(1.6)
A 		1.4
(-3)
A 		12.2
(0.7)
A 		17
B 2.7
(-2.6)
A 		3.3
(-2.3)
A 		2.1
(-3)
A 		11.7
(3)
A 		10
C 1.9
(-3)
A 		17
(3)
A 		14.4
(2)
A 		15.8
(2.5)
M 		15
avr 7.8
(-1.5) 		11.7
(1.8) 		6
(-3) 		13.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 13.8
(1.7)
A 		16.9
(3)
A 		11.5
(0.8)
A 		10
(0.2)
A 		14.3
(1.9)
A 		2.2
(-3)
A 		15
B 3.8
(-2.7)
A 		18.8
(0.7)
A 		8.3
(-1.7)
A 		4.9
(-2.4)
A 		29.1
(3)
A 		2.4
(-3)
A 		27
C 5.8
(-1.6)
A 		15.8
(3)
A 		8.2
(-0.5)
A 		10.4
(0.5)
A 		2.7
(-3)
A 		11.4
(1)
A 		13
avr 7.8
(-1.7) 		17.2
(3) 		9.3
(-1) 		8.4
(-1.4) 		15.4
(2.1) 		5.3
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183482_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4922
Sequence Type Exemplar sequence
Representative Public ID C17A2.3 NCBI
Target Description C17A2.3 /REP_DB=WormBase Gene ID /WP=CE08241 /TR=O16535 /GB=AAB66027.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062268(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062268 NCBI Caenorhabditis elegans C17A2.3 (C17A2.3) mRNA, complete cds. 11/11 None
SNAP00000028367 ENSEMBL cdna:SNAP chromosome:CEL140:II:3840071:3845502:1 11/11 None
GENEFINDER00000028378 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3843602:3849035:1 10/11 None
C17A2.3 ENSEMBL cdna:known chromosome:CEL140:II:3843602:3845502:1 gene:C17A2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3843600-3845501(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17A2.3
Entrez Gene 182699 Entrez gene
SwissProt O16535 EMBL-EBI
WormBase CE08241 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66027 Hypothetical protein C17A2.3 [Caenorhabditis elegans] ref|NP_494669.1| C17A2.3 [Caenorhabditis elegans] 0.0
blast AAB66026 Hypothetical protein C17A2.2 [Caenorhabditis elegans] ref|NP_494670.1| C17A2.2 [Caenorhabditis elegans] 0.0
blast AAB66027 Hypothetical protein C17A2.3 [Caenorhabditis elegans] ref|NP_494669.1| C17A2.3 [Caenorhabditis elegans] 1.0E-167
blast AAB66027 Hypothetical protein C17A2.3 [Caenorhabditis elegans] ref|NP_494669.1| C17A2.3 [Caenorhabditis elegans] 1.0E-162
blast CAE73193 Hypothetical protein CBG20594 [Caenorhabditis briggsae] 1.0E-152
blast CAB04490 Hypothetical protein F56H6.1 [Caenorhabditis elegans] ref|NP_493101.1| F56H6.1 [Caenorhabditis elegans] 1.0E-106
blast AAB70308 Hypothetical protein C02H6.1 [Caenorhabditis elegans] ref|NP_504891.1| C02H6.1 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 3.3E-117
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494669.1 1 32-49
C17A2.3 1 32-49
GENEFINDER00000028378 1 32-49
Sequence
Target Sequence 
>C. ELEGANS:183482_AT
cttaccctgacattgcatattctacagtttaccgaaatctaagggatacctatgatgatt
tgttccgaaaatcaatattcagtttgtattactcatataccagcatttcaaaacattttg
attggtacctgaagacagatgatgatacatttgtggcaatggatcatttaagggagtatc
taaacactttgaatccagcagaacctttatacttgggatatcgattagcacctttcatga
acaatggctacaattctggaggctccgggtacattttgtcgaacgcagcaatgcgaatgt
ttgtggaacaactctaccacaacgtaaggctatgtccttacgatagaggagaggatcgag
gaatgggaagatgcctagaatcagttggaatcacaccttcggatactagagacgatcagg
agttgaaccgatttatgccattcagaccggccgaaatacccattattggttccaagtggc
attattttccattgaaatatccattcatatcgaaaaagtttgtgacacttcatcgagttc
ctccggaaatgatgatatccctcgacaaatcactttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTACCCTGACATTGCATATTCTAC 500 221 431 Antisense
GAATCCAGCAGAACCTTTATACTTG 131 331 621 Antisense
GGGATATCGATTAGCACCTTTCATG 656 495 645 Antisense
CAATGGCTACAATTCTGGAGGCTCC 469 183 672 Antisense
GCTCCGGGTACATTTTGTCGAACGC 389 297 692 Antisense
ACAACTCTACCACAACGTAAGGCTA 195 111 738 Antisense
GTTGGAATCACACCTTCGGATACTA 639 435 814 Antisense
GAACCGATTTATGCCATTCAGACCG 120 345 855 Antisense
TCAGACCGGCCGAAATACCCATTAT 526 623 872 Antisense
ACTTCATCGAGTTCCTCCGGAAATG 522 103 957 Antisense
GATATCCCTCGACAAATCACTTTAT 683 425 984 Antisense
Sequence Source Affymetrix Proprietary Database