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[183481_s_at]

Description T26A8.4 /REP_DB=WormBase Gene ID /WP=CE07550 /TR=Q22805 /GB=AAA85756.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 04      4grp_highest_8_8 > 56      4grp_high_8_8 > 34      6grp_highest_nonorm > 51      6grp_total > 14      4grp_total > 37      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 530
1 2 3 4 range
A 982.3
(3)
P 		718.3
(0)
P 		451.9
(-3)
P 		682.4
(-0.4)
P 		530
B 740.6
(3)
P 		730.9
(2.8)
P 		457.3
(-3)
P 		523.7
(-1.6)
P 		283
C 850.3
(3)
P 		667.7
(0.2)
P 		465.6
(-3)
P 		528
(-2)
P 		385
avr 857.7
(3) 		705.6
(0.7) 		458.3
(-3) 		578
(-1.2) 		399

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 449
1 2 3 4 5 6 range
A 799.6
(3)
P 		618.2
(0.2)
P 		422.7
(-2.8)
P 		446.3
(-2.4)
P 		422.1
(-2.8)
P 		408.1
(-3)
P 		392
B 546.8
(3)
P 		535.8
(2.7)
P 		519
(2.1)
P 		504.1
(1.7)
P 		351.2
(-3)
P 		366.2
(-2.5)
P 		196
C 551.3
(2.2)
P 		582.8
(3)
P 		551.2
(2.2)
P 		491.5
(0.6)
P 		461.1
(-0.1)
P 		350.2
(-3)
P 		233
avr 632.6
(3) 		578.9
(1.8) 		497.6
(-0.1) 		480.6
(-0.5) 		411.5
(-2.1) 		374.8
(-3) 		258
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 269
1 2 3 4 range
A 357.7
(3)
P 		155.9
(-1.7)
P 		118.1
(-2.6)
P 		99.9
(-3)
P 		258
B 236.2
(3)
P 		180.5
(0.4)
P 		106
(-3)
P 		111.6
(-2.7)
P 		130
C 281.5
(3)
P 		192
(0.2)
P 		162.3
(-0.7)
P 		89
(-3)
P 		193
avr 291.8
(3) 		176.1
(-0.6) 		128.8
(-2.1) 		100.2
(-3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 147.4
(-0.4)
P 		219.9
(3)
P 		92.1
(-3)
P 		113.2
(-2)
P 		127.4
(-1.3)
P 		99.4
(-2.7)
P 		128
B 190.3
(3)
P 		178.4
(1.9)
P 		126
(-3)
P 		133.5
(-2.3)
P 		142.7
(-1.4)
P 		136.5
(-2)
P 		64
C 204.3
(3)
P 		177.8
(1.5)
P 		140.3
(-0.6)
P 		98.8
(-3)
P 		149.2
(-0.1)
P 		117.2
(-2)
P 		106
avr 180.7
(2.1) 		192
(3) 		119.5
(-2.7) 		115.2
(-3) 		139.8
(-1.1) 		117.7
(-2.8) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183481_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9746
Sequence Type Exemplar sequence
Representative Public ID T26A8.4 NCBI
Target Description T26A8.4 /REP_DB=WormBase Gene ID /WP=CE07550 /TR=Q22805 /GB=AAA85756.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069034(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069034 NCBI Caenorhabditis elegans T26A8.4 (T26A8.4) mRNA, complete cds. 11/11 None
SNAP00000003322 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8429402:8431472:-1 11/11 None
GENEFINDER00000003324 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8429402:8431472:-1 11/11 None
T26A8.4 ENSEMBL cdna:known chromosome:CEL140:IV:8428965:8431475:-1 gene:T26A8.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8429407-8431478(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26A8.4
Entrez Gene 177643 Entrez gene
SwissProt Q22805 EMBL-EBI
WormBase CE07550 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_501435 T26A8.4 [Caenorhabditis elegans] gb|AAA85756.1| Hypothetical protein T26A8.4 [Caenorhabditis elegans] 0.0
blast CAE71533 Hypothetical protein CBG18471 [Caenorhabditis briggsae] 1.0E-154
blast BAA83016.2 KIAA1064 protein [Homo sapiens] 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.2E-5
Sequence
Target Sequence 
>C. ELEGANS:183481_S_AT
tccaccgccacgaacaattgagccacctaggctgagtactcaaactcctcctataatgca
tcaacagcaaccacaactaatgaggcctatgcatccagttccaattcaacatccacatct
tcagcagcctggattagttcagccaccgcaaatagtctctcaagaacgacatactgcatc
accacaaggattcaatttagaggcaatgcttaacaagatggccaatggcgaaaagctcat
atcaagtcctcggaacaacgtggtcgacgattctccagcctcgcctcctccgtccaacta
ttccagcatgtttggatcatcgaatcgtgtagcagtcataccacaaacagtgcaagtcac
ttggggactagttcgtgttcaaaggcgacttccgtactcaaatgttgagaaccctgatcg
tatagctgccaatgatccaagaagagccaaagcaatcgccaaacagtttgatgctttcag
ctcattgctgggcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACCGCCACGAACAATTGAGCCA 368 589 1137 Antisense
AAACTCCTCCTATAATGCATCAACA 540 127 1178 Antisense
TAATGAGGCCTATGCATCCAGTTCC 615 635 1214 Antisense
ATCCAGTTCCAATTCAACATCCACA 695 39 1229 Antisense
AGTTCAGCCACCGCAAATAGTCTCT 673 63 1272 Antisense
AAAGCTCATATCAAGTCCTCGGAAC 154 125 1368 Antisense
GGAACAACGTGGTCGACGATTCTCC 305 529 1388 Antisense
CCGTCCAACTATTCCAGCATGTTTG 377 265 1426 Antisense
TTCAAAGGCGACTTCCGTACTCAAA 79 685 1514 Antisense
TGAGAACCCTGATCGTATAGCTGCC 266 565 1542 Antisense
TGCTTTCAGCTCATTGCTGGGCGCT 699 579 1608 Antisense
Sequence Source Affymetrix Proprietary Database