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[183480_at]

Description C32H11.6 /REP_DB=WormBase Gene ID /WP=CE19713 /TR=Q9XUH5 /GB=CAB05133.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 40      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 25.8
(-3)
A 		58.1
(0.9)
P 		75.5
(3)
P 		47.9
(-0.3)
P 		50
B 22.1
(-3)
A 		85.8
(2.3)
P 		94.5
(3)
P 		34
(-2)
A 		72
C 4.5
(-3)
A 		45
(-0.7)
P 		111.9
(3)
P 		63.3
(0.3)
A 		107
avr 17.5
(-3) 		63
(0.6) 		94
(3) 		48.4
(-0.6) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 37.5
(-3)
A 		75
(1.5)
P 		37.3
(-3)
P 		87.3
(3)
M 		76.8
(1.7)
P 		75.1
(1.5)
P 		50
B 35.5
(-2.4)
A 		65.9
(0.7)
P 		62
(0.3)
P 		88.3
(3)
P 		79
(2.1)
P 		29.2
(-3)
M 		59
C 12.8
(-3)
A 		74.7
(0.6)
P 		46.1
(-1.1)
A 		72.2
(0.5)
P 		115.7
(3)
P 		42.7
(-1.3)
P 		103
avr 28.6
(-3) 		71.9
(1.2) 		48.5
(-1.1) 		82.6
(2.2) 		90.5
(3) 		49
(-1) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 9.4
(-1.9)
A 		12.6
(-0.4)
P 		19.7
(3)
P 		7
(-3)
P 		13
B 7
(-3)
A 		21.2
(2.7)
P 		21.9
(3)
P 		7.2
(-2.9)
A 		15
C 1.5
(-3)
A 		12.9
(-1.2)
P 		39
(3)
P 		10.7
(-1.5)
A 		38
avr 6
(-3) 		15.6
(-0.2) 		26.9
(3) 		8.3
(-2.3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 6.9
(-3)
A 		26.7
(3)
P 		8.1
(-2.6)
P 		22.1
(1.6)
M 		23.2
(1.9)
P 		18.3
(0.5)
P 		20
B 12.4
(-2.6)
A 		21.9
(0.1)
P 		15.1
(-1.8)
P 		23.4
(0.5)
P 		32.1
(3)
P 		10.9
(-3)
M 		21
C 4.7
(-3)
A 		22.8
(0.3)
P 		11.7
(-1.7)
A 		14.5
(-1.2)
P 		37.4
(3)
P 		14.3
(-1.2)
P 		33
avr 8
(-3) 		23.8
(1.1) 		11.6
(-2.1) 		20
(0.1) 		30.9
(3) 		14.5
(-1.3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9120
Sequence Type Exemplar sequence
Representative Public ID C32H11.6 NCBI
Target Description C32H11.6 /REP_DB=WormBase Gene ID /WP=CE19713 /TR=Q9XUH5 /GB=CAB05133.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070067(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070067 NCBI Caenorhabditis elegans C32H11.6 (C32H11.6) mRNA, complete cds. 11/11 None
SNAP00000038555 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12925899:12926706:-1 11/11 None
GENEFINDER00000038567 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12925899:12926706:-1 11/11 None
C32H11.6 ENSEMBL cdna:known chromosome:CEL140:IV:12925899:12926706:-1 gene:C32H11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12938203-12939037(+) 93.85 93.85
chrIV:12925904-12926712(-) 100.0 100.0
chrIV:12933913-12934747(-) 93.85 93.85
Public Domain and Genome References
Gene Title
Ensembl C32H11.6
Entrez Gene 183130 Entrez gene
SwissProt Q9XUH5 EMBL-EBI
WormBase CE19713 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05133 Hypothetical protein C32H11.6 [Caenorhabditis elegans] ref|NP_502468.1| C32H11.6 [Caenorhabditis elegans] 1.0E-95
blast CAB05137 Hypothetical protein C32H11.11 [Caenorhabditis elegans] emb|CAB05134.1| Hypothetical protein C32H11.8 [Caenorhabditis elegans] ref|NP_502473.1| C32H11.11 [Caenorhabditis elegans] ref|NP_502470.1| C32H11.8 [Caenorhabditis elegans] 4.0E-82
blast CAB05132 Hypothetical protein C32H11.5 [Caenorhabditis elegans] ref|NP_502467.1| C32H11.5 [Caenorhabditis elegans] 1.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.7E-17
Sequence
Target Sequence 
>C. ELEGANS:183480_AT
ttctgctcctgctctaacagtacatgaagcggggggagcggttttccaaaatttaactga
aaaagctctatttgactatttccaaatcggtttcgatcagacattgactattgccgagag
ggaccaaaagagcgctgaatgggcggagaagcacggaattgctgacaaatgggctgtatt
ctattcaacgtggcaagccagagaggaaaagtttaacaaaataaaaaccactgtattcga
aagactcccatcaacttacaaaaagctttctgagatcattgccaacaaaaatcaaaccct
ttctcaagttggaaccgcaattcaagaactcgacgaaaagttcaacttggaagtacaact
catctttattctgtcgaaaattctcagactaaatgagaaaattgtgatgaacggtggact
gaatgaagttggaaatgaggctactgaaaattcgttcagaagaatgagggattttgaggg
aagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGCTCCTGCTCTAACAGTACAT 612 691 72 Antisense
GCTCCTGCTCTAACAGTACATGAAG 55 299 76 Antisense
AGTACATGAAGCGGGGGGAGCGGTT 322 1 90 Antisense
AAAAAGCTCTATTTGACTATTTCCA 13 129 131 Antisense
GACTATTTCCAAATCGGTTTCGATC 362 371 145 Antisense
AATCGGTTTCGATCAGACATTGACT 554 167 156 Antisense
GTTTCGATCAGACATTGACTATTGC 414 451 161 Antisense
GAGAGGGACCAAAAGAGCGCTGAAT 359 395 187 Antisense
ACCACTGTATTCGAAAGACTCCCAT 274 85 298 Antisense
TATTCGAAAGACTCCCATCAACTTA 346 615 305 Antisense
GAATGAGGGATTTTGAGGGAAGAAG 626 329 533 Antisense
Sequence Source Affymetrix Proprietary Database