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[183479_at]

Description Y94A7B.7 /REP_DB=WormBase Gene ID /WP=CE26312 /TR=Q9GRV0 /GB=CAC15863.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 23      6grp_cgc > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 57.3
(3)
A 		31.9
(-0.5)
A 		14
(-3)
A 		28
(-1.1)
A 		43
B 51.1
(3)
A 		9.9
(-2.8)
A 		8.8
(-3)
A 		34.9
(0.7)
A 		42
C 4.9
(-3)
A 		5.3
(-2.9)
A 		14.6
(-0.4)
A 		27.4
(3)
A 		23
avr 37.8
(3) 		15.7
(-2.2) 		12.5
(-3) 		30.1
(1.2) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 11.7
(-3)
A 		24.5
(-1)
A 		50.5
(3)
A 		41.5
(1.6)
A 		34.2
(0.5)
A 		23
(-1.3)
A 		39
B 36.8
(1.6)
A 		46.2
(3)
M 		28.8
(0.4)
A 		8.6
(-2.7)
A 		6.5
(-3)
A 		17.2
(-1.4)
A 		40
C 4.4
(-3)
A 		44.9
(3)
A 		14.4
(-1.5)
A 		15.1
(-1.4)
A 		18.5
(-0.9)
A 		35.9
(1.7)
A 		41
avr 17.6
(-3) 		38.5
(3) 		31.2
(0.9) 		21.7
(-1.8) 		19.7
(-2.4) 		25.4
(-0.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20.9
(3)
A 		6.9
(-1.9)
A 		3.7
(-3)
A 		4.1
(-2.9)
A 		17
B 16.3
(3)
A 		2.4
(-2.8)
A 		2
(-3)
A 		7.4
(-0.7)
A 		14
C 1.6
(-2.8)
A 		1.5
(-3)
A 		5.1
(3)
A 		4.6
(2.2)
A 		4
avr 12.9
(3) 		3.6
(-3) 		3.6
(-3) 		5.4
(-1.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.2
(-3)
A 		8.7
(1.4)
A 		11
(3)
A 		10.5
(2.7)
A 		10.3
(2.5)
A 		5.6
(-0.7)
A 		9
B 12.8
(1.8)
A 		15.4
(3)
M 		7
(-0.8)
A 		2.3
(-3)
A 		2.7
(-2.8)
A 		6.4
(-1.1)
A 		13
C 1.6
(-3)
A 		13.7
(3)
A 		3.7
(-2)
A 		3
(-2.3)
A 		6
(-0.8)
A 		12
(2.2)
A 		12
avr 5.5
(-2.8) 		12.6
(3) 		7.2
(-1.4) 		5.3
(-3) 		6.3
(-2.2) 		8
(-0.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183479_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13977
Sequence Type Exemplar sequence
Representative Public ID Y94A7B.7 NCBI
Target Description Y94A7B.7 /REP_DB=WormBase Gene ID /WP=CE26312 /TR=Q9GRV0 /GB=CAC15863.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075101(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075101 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-303) (srh-303) mRNA, complete cds. 11/11 None
SNAP00000042698 ENSEMBL cdna:SNAP chromosome:CEL140:V:17831773:17835994:1 11/11 None
GENEFINDER00000042700 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17827486:17835910:1 10/11 None
Y94A7B.7 ENSEMBL cdna:known chromosome:CEL140:V:17834226:17835994:1 gene:Y94A7B.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17834225-17835994(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-303
Ensembl Y94A7B.7
Entrez Gene 190796 Entrez gene
SwissProt Q9GRV0 EMBL-EBI
WormBase CE26312 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC15865 Hypothetical protein Y94A7B.8 [Caenorhabditis elegans] ref|NP_507500.2| Serpentine Receptor, class H family member (srh-301) [Caenorhabditis elegans] 1.0E-179
blast CAC15863 Hypothetical protein Y94A7B.7 [Caenorhabditis elegans] ref|NP_507502.1| Serpentine Receptor, class H family member (srh-303) [Caenorhabditis elegans] 1.0E-176
blast CAC15863 Hypothetical protein Y94A7B.7 [Caenorhabditis elegans] ref|NP_507502.1| Serpentine Receptor, class H family member (srh-303) [Caenorhabditis elegans] 1.0E-161
blast CAC15864 Hypothetical protein Y94A7B.9 [Caenorhabditis elegans] ref|NP_507501.1| Serpentine Receptor, class H family member (srh-304) [Caenorhabditis elegans] 1.0E-139
blast CAC15864 Hypothetical protein Y94A7B.9 [Caenorhabditis elegans] ref|NP_507501.1| Serpentine Receptor, class H family member (srh-304) [Caenorhabditis elegans] 1.0E-128
blast CAC15865 Hypothetical protein Y94A7B.8 [Caenorhabditis elegans] ref|NP_507500.2| Serpentine Receptor, class H family member (srh-301) [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.9E-38
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.1E-38
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507502.1 7 15-36,49-71,94-114,135-152,195-217,244-266,276-298
Y94A7B.7 7 15-36,49-71,94-114,135-152,195-217,244-266,276-298
SNAP00000042698 10 13-35,45-67,112-134,144-164,177-199,222-242,263-280,323-345,372-394,404-426
GENEFINDER00000042700 15 10-32,45-67,87-109,130-152,195-217,247-269,279-298,361-383,496-518,531-553,576-596,617-634,677-699,726-748,758-780
Sequence
Target Sequence 
>C. ELEGANS:183479_AT
aaaaagggtccctggcgatatctgcgttatccgttcctactcttcaactacacacttgca
cttgccctctgcattccggtctacttggaagctcccatcgatcaggagaatgccagacgt
gttttatttgaaacacattcacaggcctgtaaagtggtcgtcgataagactcgaatattt
gtgatgaattacgaagagaatatttggccatcactacgtcgaaatgcgctgaattgtttt
gtcttggcggagattatatttctcggtgtgttactgagagtggaaatgaatagagctatt
aagaatatccagtcgtcaatatcactagataccctccaaaagcagaaaatattcattaga
gccttgaatctacagatagctattccaattgcaatcatcttcatcccagccgcaattgcc
gcagttctaaaaatgaaaagttccagccaacaaggcattgataacattctgaacattatc
acatcgcttcatggagcatctgcaacaattctaatgatatacctacagaaacctttcaga
aaggtttttctcagcattgtttgtcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAAGGGTCCCTGGCGATATCTGC 690 127 382 Antisense
CTCTGCATTCCGGTCTACTTGGAAG 587 229 448 Antisense
TACTTGGAAGCTCCCATCGATCAGG 351 645 463 Antisense
CAGGCCTGTAAAGTGGTCGTCGATA 189 209 523 Antisense
GAGAATATTTGGCCATCACTACGTC 498 391 577 Antisense
GCCATCACTACGTCGAAATGCGCTG 310 281 588 Antisense
GCTGAATTGTTTTGTCTTGGCGGAG 182 297 609 Antisense
GATTATATTTCTCGGTGTGTTACTG 566 429 633 Antisense
AGCCGCAATTGCCGCAGTTCTAAAA 605 81 789 Antisense
ATCACATCGCTTCATGGAGCATCTG 319 27 859 Antisense
GGTTTTTCTCAGCATTGTTTGTCGT 653 505 924 Antisense
Sequence Source Affymetrix Proprietary Database