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[183478_at]

Description Y48C3A.1 /REP_DB=WormBase Gene ID /WP=CE22133 /TR=Q9NAG8 /GB=CAB55099.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 3.3
(-3)
A 		5
(-2.9)
A 		4.1
(-2.9)
A 		71.4
(3)
A 		68
B 4.5
(-2.8)
A 		4.3
(-3)
A 		6.6
(-0.9)
A 		10.8
(3)
A 		7
C 5.3
(-3)
A 		7.5
(-2.7)
A 		6.3
(-2.9)
A 		52.6
(3)
A 		47
avr 4.4
(-3) 		5.6
(-2.8) 		5.7
(-2.8) 		44.9
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 3.1
(-0.8)
A 		1.7
(-3)
A 		5.2
(2.5)
A 		1.8
(-2.8)
A 		4.5
(1.4)
A 		5.5
(3)
A 		4
B 3.1
(-1.2)
A 		3.5
(-0.7)
A 		6.3
(3)
A 		5.2
(1.6)
A 		4.7
(0.9)
A 		1.7
(-3)
A 		5
C 5.5
(2.4)
A 		3.6
(-1.7)
A 		5.8
(3)
A 		3
(-3)
A 		4.6
(0.4)
A 		5
(1.3)
A 		3
avr 3.9
(-0.9) 		2.9
(-3) 		5.8
(3) 		3.3
(-2.2) 		4.6
(0.5) 		4.1
(-0.5) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.2
(-2.9)
A 		1.1
(-3)
A 		1.1
(-3)
A 		10.5
(3)
A 		9
B 1.4
(-1.5)
A 		1.1
(-3)
A 		1.5
(-1)
A 		2.3
(3)
A 		1
C 1.7
(-3)
A 		2.2
(-2.6)
A 		2.2
(-2.6)
A 		8.9
(3)
A 		7
avr 1.4
(-3) 		1.5
(-2.9) 		1.6
(-2.8) 		7.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.6
(-2.3)
A 		0.6
(-2.3)
A 		1.1
(1)
A 		0.5
(-3)
A 		1.4
(3)
A 		1.3
(2.3)
A 		1
B 1.1
(-0.7)
A 		1.2
(-0.2)
A 		1.5
(1.2)
A 		1.4
(0.7)
A 		1.9
(3)
A 		0.6
(-3)
A 		1
C 2.1
(3)
A 		1.1
(-1)
A 		1.5
(0.6)
A 		0.6
(-3)
A 		1.5
(0.6)
A 		1.7
(1.4)
A 		2
avr 1.3
(0.8) 		1
(-1.5) 		1.4
(1.5) 		0.8
(-3) 		1.6
(3) 		1.2
(-0) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3877
Sequence Type Exemplar sequence
Representative Public ID Y48C3A.1 NCBI
Target Description Y48C3A.1 /REP_DB=WormBase Gene ID /WP=CE22133 /TR=Q9NAG8 /GB=CAB55099.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064408 NCBI Caenorhabditis elegans Y48C3A.1 (Y48C3A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000006665 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13260391:13261097:1 11/11 None
Y48C3A.1 ENSEMBL cdna:known chromosome:CEL140:II:13260391:13261097:1 gene:Y48C3A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13260387-13261094(+) 91.67 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48C3A.1
Entrez Gene 190018 Entrez gene
SwissProt Q9NAG8 EMBL-EBI
WormBase CE22133 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55099 Hypothetical protein Y48C3A.1 [Caenorhabditis elegans] ref|NP_496809.1| Y48C3A.1 [Caenorhabditis elegans] 2.0E-52
Sequence
Target Sequence 
>C. ELEGANS:183478_AT
taagcccaagccggtacagctgtacatacaaaattacttcatttacatatcttttcaata
caataaacattttttcgtttacaatttaattctcattttcagaaaattccccaaaattaa
tgcaattttaaaaatcaccgttgaccgtaatccacatttaaaggagcacgcacttctact
gaatggtctcggcacgctaacggaaacgttcttatcacagcaaatcggagcgaaactcga
ccgcgataacaggaaaaagtcgaaaacttcactcgaatcatcttctcgacacgattctgt
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGCCCAAGCCGGTACAGCTGTAC 43 637 30 Antisense
AAATTACTTCATTTACATATCTTTT 17 117 60 Antisense
CGTTGACCGTAATCCACATTTAAAG 522 1 168 Antisense
AAAGGAGCACGCACTTCTACTGAAT 639 121 189 Antisense
GCACTTCTACTGAATGGTCTCGGCA 133 317 199 Antisense
GTCTCGGCACGCTAACGGAAACGTT 32 463 215 Antisense
GAAACGTTCTTATCACAGCAAATCG 482 357 232 Antisense
AAATCGGAGCGAAACTCGACCGCGA 179 117 251 Antisense
GAAACTCGACCGCGATAACAGGAAA 76 357 261 Antisense
AAAACTTCACTCGAATCATCTTCTC 292 131 292 Antisense
ATCATCTTCTCGACACGATTCTGTT 205 31 306 Antisense
Sequence Source Affymetrix Proprietary Database